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The map label for this gene is potA [H]

Identifier: 194736579

GI number: 194736579

Start: 1309983

End: 1310573

Strand: Direct

Name: potA [H]

Synonym: SeSA_A1349

Alternate gene names: 194736579

Gene position: 1309983-1310573 (Clockwise)

Preceding gene: 194737552

Following gene: 194735110

Centisome position: 27.82

GC content: 56.85

Gene sequence:

>591_bases
ATGCTAAGCTGCCGCGACCTCGTTATTCGTCAGGGTGGGAAAGTCTTATGGCAGAACCTGACGTTTACGATTTCTGCCGG
TGAACGGGTAGGAATTCATGCGCCAAGCGGAACGGGGAAAACAACGTTGGGGCGCGTCCTGGCCGGATGGCAAAAACCGA
CGGCGGGCGACGTTCTGCTGGACGGTAGCCCGTTACCCCTGCATCAGTATTGTCCGGTACAGCTTGTCCCCCAGCATCCT
GAACTGACGTTTAATCCCTGGCGAAGCGCCGGAGACGCTGTGCGTGATGCCTGGCAGCCTGACCCGGAAACGATGAGGCG
TTTGTATGTGCAGCCCGAGTGGCTGACGCGTCGGCCAATGCAGCTCTCTGGCGGGGAGTTGGCGCGAATTGCGATACTGC
GCGCGCTTGACCCGCGAACGCGTTTTCTGATTGCCGACGAAATGACGGCGCAACTCGATCCGTCTATTCAAAAAGCGATA
TGGGTATACGTGCTTGAGGTGTGTCGCAGCCGTTCATTAGGGATGTTGGTGATTAGTCATCAGTCTGCGCTGCTTGATCA
AGTCTGTACCCGCCATTTACAGGTGGAATAG

Upstream 100 bases:

>100_bases
AACGATTACAGCCGGAAGAGATGAGTGAGCCGTTAAAACGACAATGGCAAGCATTGCCTGAACTAAACCCGTTATTTATG
CCGACCAGAGAGGGAATAGA

Downstream 100 bases:

>100_bases
CCGCAAGTCGTTTCTCCGCATTGCCGTGTCGCCGTTAACGCACCGGGAACCCATGGGTTCCCGTTATTGTCGGCAGAGAT
TTTATTGCATGACGCGTTTA

Product: ATP-binding protein of ABC transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETMRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE

Sequences:

>Translated_196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETMRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE
>Mature_196_residues
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHP
ELTFNPWRSAGDAVRDAWQPDPETMRRLYVQPEWLTRRPMQLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAI
WVYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE

Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]

COG id: COG1124

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=188, Percent_Identity=28.1914893617021, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI6005701, Length=190, Percent_Identity=28.4210526315789, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI27477115, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787547, Length=193, Percent_Identity=27.4611398963731, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788506, Length=196, Percent_Identity=29.5918367346939, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789891, Length=197, Percent_Identity=26.3959390862944, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=25.5924170616114, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87081791, Length=193, Percent_Identity=28.4974093264249, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI145693107, Length=193, Percent_Identity=28.4974093264249, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787758, Length=186, Percent_Identity=31.7204301075269, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1786698, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=26.6355140186916, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789962, Length=189, Percent_Identity=25.3968253968254, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=27.7486910994764, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI87081709, Length=193, Percent_Identity=25.9067357512953, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI48994883, Length=222, Percent_Identity=26.1261261261261, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787164, Length=187, Percent_Identity=28.8770053475936, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786345, Length=211, Percent_Identity=29.3838862559242, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789890, Length=188, Percent_Identity=26.5957446808511, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=166, Percent_Identity=33.7349397590361, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=189, Percent_Identity=30.6878306878307, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21357907, Length=184, Percent_Identity=28.804347826087, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR017879
- InterPro:   IPR005893
- InterPro:   IPR013611 [H]

Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]

EC number: =3.6.3.31 [H]

Molecular weight: Translated: 21967; Mature: 21967

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLL
CCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDPETMRRLYVQPEWLTRRPM
CCCCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCC
QLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAIWVYVLEVCRSRSLGMLVISH
CCCCCCHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
QSALLDQVCTRHLQVE
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLL
CCCHHHHHHHCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDPETMRRLYVQPEWLTRRPM
CCCCCCCCCCCCEEEECCCCCCEECCCCCCCHHHHHCCCCCHHHHHHHHCCCHHHHCCCC
QLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAIWVYVLEVCRSRSLGMLVISH
CCCCCCHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
QSALLDQVCTRHLQVE
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA