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The map label for this gene is ygbM [H]

Identifier: 194734881

GI number: 194734881

Start: 2963369

End: 2964145

Strand: Reverse

Name: ygbM [H]

Synonym: SeSA_A3065

Alternate gene names: 194734881

Gene position: 2964145-2963369 (Counterclockwise)

Preceding gene: 194734554

Following gene: 194738064

Centisome position: 62.95

GC content: 57.92

Gene sequence:

>777_bases
ATGCCGCGTTTTGCCGCCAATTTGTCGATGATGTTTACCGAAGTGCCGTTTACCGAGCGTTTTGCCGCCGCTGCCGAAGC
CGGTTTTCAGGCCGTTGAGTTTCTGTTCCCCTACGGCTTTGCCGCCAGCGAGATTAAAGCCAAGCTATCGCGTCATGATC
TGACGCTGGCGCTGTTTAATACTTCGGCGGGCGATACCGCGGCGGGCGAGTGGGGACGTGCCGCGCTACCGGGGCGCGAA
CACGACGCGCGCGCCGATATCGATCTGGCTCTGGAATACGCTCTGGCGCTGGAATGCGAGCAGGTTCACATCATGGCGGG
CGTCGTGCCGGATGGCGCTGATGGCGCACGTTATCGCGCCACGTTTATCGATAATTTGCGTTATGCCGCCGACCGGTTTG
CCGCCCACGATAAACGTATTTTGATCGAAGCGCTGAGTCCCGGCGTTAAACCCGGCTACCTCTTTTCCAGCCAATATCAG
GCGCTGGGCATCGCAGAAGAGGTTGACCGCCCGAATGTGTTCATCCAGCTCGACACTTTCCACGCACAAAAAGTGGATGG
CAATTTGAGTCACCTGATTCGCGAGTACGCGGGCCGCTATGCCCATGTACAAATCGCCTCGCTACCGGACAGACATGAAC
CGGATGATGGCGAGATCAACTACCCATGGCTGTTCCGGCTGTTCGATGACGTAGGTTATCGCGGCTGGATAGGCTGCGAA
TACCAACCACGGAATACCACGCAGGACGGGCTTGGCTGGTTTAACGCCTGGCGCTAA

Upstream 100 bases:

>100_bases
GAGGAGCTGGAAGAGACGGCAAAGCTGATTTTTATCCTTGGCGAACGCCCGATTCGTTATTTAACCACCGAAGAAATTGC
GCAGTTAAGGAGATAACCCG

Downstream 100 bases:

>100_bases
CCCTGAACTACCCTACACAACAATAAAGAGGACATCCGGATGCAGATTATCATTACCGGCGGGGGCGGCTTTTTAGGCCA
GAAACTCGCAAGCGCCTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPRFAANLSMMFTEVPFTERFAAAAEAGFQAVEFLFPYGFAASEIKAKLSRHDLTLALFNTSAGDTAAGEWGRAALPGRE
HDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQ
ALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCE
YQPRNTTQDGLGWFNAWR

Sequences:

>Translated_258_residues
MPRFAANLSMMFTEVPFTERFAAAAEAGFQAVEFLFPYGFAASEIKAKLSRHDLTLALFNTSAGDTAAGEWGRAALPGRE
HDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQ
ALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCE
YQPRNTTQDGLGWFNAWR
>Mature_257_residues
PRFAANLSMMFTEVPFTERFAAAAEAGFQAVEFLFPYGFAASEIKAKLSRHDLTLALFNTSAGDTAAGEWGRAALPGREH
DARADIDLALEYALALECEQVHIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQA
LGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCEY
QPRNTTQDGLGWFNAWR

Specific function: Unknown

COG id: COG3622

COG function: function code G; Hydroxypyruvate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Homo sapiens, GI300068962, Length=262, Percent_Identity=42.3664122137405, Blast_Score=207, Evalue=9e-54,
Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=41.5637860082305, Blast_Score=182, Evalue=3e-46,
Organism=Escherichia coli, GI1789095, Length=258, Percent_Identity=79.4573643410853, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1786718, Length=258, Percent_Identity=41.4728682170543, Blast_Score=218, Evalue=2e-58,
Organism=Caenorhabditis elegans, GI17552022, Length=240, Percent_Identity=34.5833333333333, Blast_Score=152, Evalue=2e-37,
Organism=Drosophila melanogaster, GI17530883, Length=258, Percent_Identity=35.6589147286822, Blast_Score=169, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 28883; Mature: 28751

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFAANLSMMFTEVPFTERFAAAAEAGFQAVEFLFPYGFAASEIKAKLSRHDLTLALFN
CCCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEE
TSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCEEEEEEEECCCCCCCCEEEH
TFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQALGIAEEVDRPNVFIQLDTF
HHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCEEECCCCHHCCCHHHCCCCCEEEEEECC
HAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCE
CCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCE
YQPRNTTQDGLGWFNAWR
ECCCCCCCCCCCHHCCCC
>Mature Secondary Structure 
PRFAANLSMMFTEVPFTERFAAAAEAGFQAVEFLFPYGFAASEIKAKLSRHDLTLALFN
CCHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEEEE
TSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQVHIMAGVVPDGADGARYRA
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCEEEEEEEECCCCCCCCEEEH
TFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQALGIAEEVDRPNVFIQLDTF
HHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCCEEECCCCHHCCCHHHCCCCCEEEEEECC
HAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYPWLFRLFDDVGYRGWIGCE
CCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCE
YQPRNTTQDGLGWFNAWR
ECCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]