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The map label for this gene is 194734856

Identifier: 194734856

GI number: 194734856

Start: 3190967

End: 3191452

Strand: Reverse

Name: 194734856

Synonym: SeSA_A3308

Alternate gene names: NA

Gene position: 3191452-3190967 (Counterclockwise)

Preceding gene: 194737725

Following gene: 194734634

Centisome position: 67.77

GC content: 50.41

Gene sequence:

>486_bases
ATGGATGCGATTTTTTTAAAGCTCGACAATATCAAAGGCGAAAGCCAGGTTGAAGGCTTTGAAGATCAGATAGAGATCAT
GTCTTATAGCCACAATGTGGCAATGCAGGTAAATAACGATGTTAGCCTCACTGAGCGGACTTCCGGGCGTGCGCATGTTG
GTGAAATGTCGCTCACCAAATTTGTCGACCTCGCCACGCCTGTGCTCAATGAGTACTGCTGTAGCGGGAGGCTAATTAGA
ACCGCGGTGCTGACGTTGTGCCGCAATGACGACGGCAAAATGCGGTCGCTTATCGTTTATACCCTGACAAACGTGCTGAT
ATCACAACTCAGTGTTAGCGGCGGCGCCGGCGGTAAGCCGGTGGAAACGATGTCGCTGAACTTCACGAAAATCGAATGGC
AAATCACTGCCGAGAAATCAGACGGCGCTCAACAGGAGTCCAGAACGTCAGTATGGGATCTGGCGATGGACCAGATAGGG
AAATGA

Upstream 100 bases:

>100_bases
GTGTTTTTTGGTAGTTGCGCTTTTAATAAGAGTCACAAGCGTTGGCTGCTGGTATTCGTCTGGCTGCTGAACTGCCACCT
GATCAACAAGGAGATAAATC

Downstream 100 bases:

>100_bases
TGATGACGCCAACCATTCCGGTCGCGCTATTCGACAGGCTCTTGGTTGAGGGGATAAGCCCACATGAATTGGTACGCCGC
AAGTTAATGTGTTTATTCAA

Product: putative cytoplasmic protein

Products: NA

Alternate protein names: Hemolysin-Coregulated Protein; Hcp Family T6SS H; Hcp1 Family Type VI Secretion System Effector; Cytoplasmic Protein SciM; Type VI Secretion System Protein; Secretion System Protein Hemolysin-Coregulated Protein; SciM Protein

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMDQIG
K

Sequences:

>Translated_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMDQIG
K
>Mature_161_residues
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIR
TAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMDQIG
K

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17754; Mature: 17754

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHEEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMDQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLTERTSGRAHVGEMSLTK
CCEEEEEEECCCCCCCCCCCHHHHHEEEECCEEEEEECCCCEEEECCCCCCEECCHHHHH
FVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTLTNVLISQLSVSGGAGGKP
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMDQIGK
EEEEEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA