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The map label for this gene is aggD [H]

Identifier: 194734343

GI number: 194734343

Start: 343747

End: 344484

Strand: Direct

Name: aggD [H]

Synonym: SeSA_A0337

Alternate gene names: 194734343

Gene position: 343747-344484 (Clockwise)

Preceding gene: 289472797

Following gene: 194736639

Centisome position: 7.3

GC content: 47.56

Gene sequence:

>738_bases
ATGAAAACAATTAATTTTGTTTTAATGGCGGCAGCTTTGTTCGCCTCTAATTCTATGGTTTCAGTATATGCCGCCAGGCA
GCAATTAAATTCAGCCACTAAATCATTCAGCGTGAAGCTGGGAGCTACACGTGTGATTTATCACGCTGGTACACCAAGCG
CGACGCTCTCGGTGAGCAACCCGCAGAATTACCCTATTTTGGTTCAGTCTTCAGTCAAAGCAGAAGACAAAAATTCGCCA
GCCCCCTTTATGGTGATGCCGCCTCTATTTCGTTTAGAAGCGAACCAGCAGAGTCAACTGCGTATTATCCGTACTGGTGG
TGACATGCCAACGGATCGCGAGACTTTACAGTGGGTCTGTATAAAGGCGCTACCACCCGAAAATGAACAGTCGGATACAC
AGGCTAAGGGCGCGACCCTTGACCTCAATTTGTCCATCAGCACCTGTGACAAGCTGATTTTCCGCCCGGATGCCGTGAAG
GGGACGCCGGAAGATGTTGCAGGAAATTTAAGATGGGTGGAGACGGGCAACAAACTTAAGGTAGAGAACCCCACCCCGTT
TTACATGAATTTAGCCTCTGTCACAGTAGGGGGAAAGCCCATTACAGGGCTTGAGTATATCCCCCCCTTTGCTGACAAAA
CACTAAATATGCCAGGTGGCACTCGTGGTGATGTCGAGTGGAAAATTATTACAGACTTAGGTGGTGAAAGTCATCCGTTC
CACTACGTTTTTAAATAA

Upstream 100 bases:

>100_bases
TGGGATATCAGCCTTAATAGTAAACAACTATTAGTGTATTGCGCCTTGTTTAAGGCGTAATACACATCAAGTTTTTCATT
TTTCTTTTACAATTTTTGAT

Downstream 100 bases:

>100_bases
ATTCAAGGATTTAGCGGCAGAAAATGAAGTTCAAACAACCTGCCTTGCTACTGTTCATCGCGGGAGTGGTTCATTGCGCA
AATGCGCACGCTTACACATT

Product: pilus assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKTINFVLMAAALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPSATLSVSNPQNYPILVQSSVKAEDKNSP
APFMVMPPLFRLEANQQSQLRIIRTGGDMPTDRETLQWVCIKALPPENEQSDTQAKGATLDLNLSISTCDKLIFRPDAVK
GTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPF
HYVFK

Sequences:

>Translated_245_residues
MKTINFVLMAAALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPSATLSVSNPQNYPILVQSSVKAEDKNSP
APFMVMPPLFRLEANQQSQLRIIRTGGDMPTDRETLQWVCIKALPPENEQSDTQAKGATLDLNLSISTCDKLIFRPDAVK
GTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPF
HYVFK
>Mature_245_residues
MKTINFVLMAAALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPSATLSVSNPQNYPILVQSSVKAEDKNSP
APFMVMPPLFRLEANQQSQLRIIRTGGDMPTDRETLQWVCIKALPPENEQSDTQAKGATLDLNLSISTCDKLIFRPDAVK
GTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPF
HYVFK

Specific function: Involved in the biogenesis of the AAF/I fimbriae [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=202, Percent_Identity=36.6336633663366, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790771, Length=236, Percent_Identity=31.7796610169492, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786743, Length=205, Percent_Identity=30.7317073170732, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786333, Length=216, Percent_Identity=30.5555555555556, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787171, Length=202, Percent_Identity=29.2079207920792, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87081806, Length=225, Percent_Identity=28, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786936, Length=155, Percent_Identity=30.9677419354839, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788677, Length=174, Percent_Identity=26.4367816091954, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26775; Mature: 26775

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTINFVLMAAALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPSATLSVSN
CCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCEEEEECC
PQNYPILVQSSVKAEDKNSPAPFMVMPPLFRLEANQQSQLRIIRTGGDMPTDRETLQWVC
CCCCCEEEECCCCCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCHHEEEEE
IKALPPENEQSDTQAKGATLDLNLSISTCDKLIFRPDAVKGTPEDVAGNLRWVETGNKLK
EECCCCCCCCCCHHCCCCEEEEEEEHHHHHHHEECCCCCCCCHHHHCCCEEEEECCCEEE
VENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPF
ECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCE
HYVFK
EEEEC
>Mature Secondary Structure
MKTINFVLMAAALFASNSMVSVYAARQQLNSATKSFSVKLGATRVIYHAGTPSATLSVSN
CCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCEEEEECC
PQNYPILVQSSVKAEDKNSPAPFMVMPPLFRLEANQQSQLRIIRTGGDMPTDRETLQWVC
CCCCCEEEECCCCCCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCHHEEEEE
IKALPPENEQSDTQAKGATLDLNLSISTCDKLIFRPDAVKGTPEDVAGNLRWVETGNKLK
EECCCCCCCCCCHHCCCCEEEEEEEHHHHHHHEECCCCCCCCHHHHCCCEEEEECCCEEE
VENPTPFYMNLASVTVGGKPITGLEYIPPFADKTLNMPGGTRGDVEWKIITDLGGESHPF
ECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCE
HYVFK
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7914189 [H]