| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is afaC [H]
Identifier: 194736639
GI number: 194736639
Start: 344508
End: 347018
Strand: Direct
Name: afaC [H]
Synonym: SeSA_A0338
Alternate gene names: 194736639
Gene position: 344508-347018 (Clockwise)
Preceding gene: 194734343
Following gene: 194736030
Centisome position: 7.32
GC content: 54.68
Gene sequence:
>2511_bases ATGAAGTTCAAACAACCTGCCTTGCTACTGTTCATCGCGGGAGTGGTTCATTGCGCAAATGCGCACGCTTACACATTCGA TGCATCAATGTTGGGCGATGCAGCGAAAGGGGTTGATATGTCGCTCTTTAACCAGGGGGTACAACAGCCAGGGACTTATC GAGTGGACGTGATGGTGAATGGTAAACGTGTCGACACCCGTGATGTGGTGTTCAAATTGGAAAAGGATGGGCAAGGAACG CCTTTTCTGGCTCCTTGTTTGACGGTCAGTCAGCTTTCACGCTACGGCGTAAAAACGGAAGATTACCCTCAGTTGTGGAA AGCAGCAAAGACCCCAGATGAGTGTGCGGATCTGACCGCCATTCCACAGGCTAAAGCGGTACTGGATATCAATAATCAGC AACTGCAACTGAGTATTCCGCAGTTGGCGTTGCGTCCGGAATTTAAGGGGATCGCTCCTGAAGATCTCTGGGATGATGGT ATTCCGGCGTTTCTGATGAACTACAGTGCGAGGACAACGCAGACGGATTACAAAATGGATATGGAGAGGCGTGACAACTC TTCCTGGGTACAACTGCAACCGGGAATCAATATAGGTGCGTGGCGTGTCCGCAATGCGACCAGCTGGCAGCGGAGTAGTC AACTGTCGGGGAAGTGGCAGGCAGCATATACCTATGCTGAGCGTGGACTGTACCCACTAAAAAGTCGTCTGACTCTGGGG CAAAAGACTTCGCAGGGGGAGATATTTGATAGTGTGCCATTTACCGGTGTGATGTTGGCATCGGATGACAACATGGTGCC CTACAGTGAGCGGCAGTTTGCTCCAGTAGTGCGTGGGATTGCCCGCACGCAGGCTCGGGTGGAGGTCAAACAGAATGGTT ACACCATTTACAACACCACCGTGGCGCCCGGACCGTTTGCACTGCGGGATCTGTCGGTAACAGACAGTAGTGGTGATCTG CATGTCACCGTGTGGGAGGCCGATGGCAGTACACAAATGTTTGTGGTGCCGTATCAGACCCCGGCGATAGCACTGCACCA GGGATATTTGAAGTACAGCCTGTTGGCGGGCCGATACCGATCGTCAGACTCTGCAACGGATAAGGCGCAGATCGCGCAGG CTACGTTGATGTATGGTCTGCCGTGGAATCTCACTGCATACGGCGGTATACAGAGTGCAACGCACTATCAAGCTGCATTG CTTGGTTTGGGGGGATCTCTCGGGCGATGGGGGAGTTTATCTGTCGATGGAAGCGACACACACAGTCAGCGTCAGGGGGA GGCGGTACAGCAAGGAGCCTCCTGGCGACTGCGTTACAGCAACCAGCTGACTGCGACGGGGACAAATTTTTTTCTGACGA GATGGCAGTATGCCTCGCAGGGCTATAACACCTTATCCGATGTGCTCGACAGTTATCGACATGATGGCAACCGTCTATGG TCGTGGCGAGATAATTTGCAGCCGAGCTCGCGTACCACCCTGATGTTGAGTCAGTCATGGGGGAGGCATTTGGGCAATCT GAGTTTAACCGGTTCCCGTACCGACTGGCGTAATCGCCCCGGTCATGATGACAGCTACGGACTGAGTTGGGGAACCTCTA TCGGAGGGGGCTCGCTGTCATTGAACTGGAATCAAAACAGAACGCTGTGGCGCAATGGCGCGCACCGTAAAGAGAACATA ACCAGCCTGGGGTTCAGTATGCCATTAAGCCGCTGGACGGGGAATAATGTAAGTGCCAGTTGGCAGATGACTTCACCATC ACACGGTGGTCAGACGCAACAAGTGGGGGTCAACGGAGAGGCATTCAGTCAGCAACTGGATTGGGAGGTGCGTCAGAGTT ACCGTGCCGATGCCCCGCCAGGTGGTGGTAATAACAGCGCATTGCACTTGGCATGGAATGGGGCTTACGGCCTGTTAGGT GGTGACTATAGCTACAGCCGGGCGATGAGCCAGATGGGAGTCAATATCGCGGGAGGTATAGTTATCCACCATCATGGTGT GACGCTGGGGCAACCTTTGCAAGGCTCAGTGGCGCTGGTTGAAGCGCCAGGGGCCTCGGGGGTGCCAGTTGGCGGCTGGC CTGGCGTTAAGACGGATTTTCGTGGCGACACCACAGTGGGCAACCTGAACGTCTATCAGGAGAATACAGTCAGCCTCGAT CCGTCGCGACTACCGGATGACGCAGAGGTCACACAAACCGATGTGCGCGTGGTGCCAACCGAAGGGGCGGTGGTGGAAGC GAAGTTTCACACTCGCATCGGGGCCAGGGCACTGATGACGCTGAAACGGGAAGATGGTAGCGCCATTCCTTTCGGGGCGC AGGTTACAGTCAATGGGCAGGATGGCAGTGCTGCTCTGGTGGATACTGATAGCCAGGTTTATCTCACTGGTCTGGCGGAT AAGGGCGAACTGACGGTGAAATGGGGAGCACAGCAATGTCGGGTTAACTACCAGCTACCTGCCCACAAGGGAATCGCGGG CTTGTATCAAATGAGCGGTCTCTGCAGATAG
Upstream 100 bases:
>100_bases CTCGTGGTGATGTCGAGTGGAAAATTATTACAGACTTAGGTGGTGAAAGTCATCCGTTCCACTACGTTTTTAAATAAATT CAAGGATTTAGCGGCAGAAA
Downstream 100 bases:
>100_bases CCGATTCTGAAGGAGAGAATAATGTGGATGAAAATACAGCGAGTGAAAACGGTTATCTATAGCGTAAGCTTACTGGTCAC TGCCAGTAGCTTGGTGCCGA
Product: outer-membrane fimbrial usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 836; Mature: 836
Protein sequence:
>836_residues MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG GDYSYSRAMSQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR
Sequences:
>Translated_836_residues MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG GDYSYSRAMSQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR >Mature_836_residues MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGT PFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDL HVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAAL LGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENI TSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLG GDYSYSRAMSQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGLAD KGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR
Specific function: Involved in the export and assembly of AFA-III afimbrial adhesin subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=868, Percent_Identity=36.6359447004608, Blast_Score=503, Evalue=1e-143, Organism=Escherichia coli, GI1787172, Length=865, Percent_Identity=35.606936416185, Blast_Score=494, Evalue=1e-140, Organism=Escherichia coli, GI1789533, Length=847, Percent_Identity=35.7733175914994, Blast_Score=463, Evalue=1e-131, Organism=Escherichia coli, GI1786744, Length=853, Percent_Identity=35.5216881594373, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI1786332, Length=863, Percent_Identity=27.3464658169177, Blast_Score=306, Evalue=3e-84, Organism=Escherichia coli, GI1788427, Length=765, Percent_Identity=29.4117647058824, Blast_Score=293, Evalue=2e-80, Organism=Escherichia coli, GI87081778, Length=831, Percent_Identity=26.9554753309266, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI1789610, Length=807, Percent_Identity=23.7918215613383, Blast_Score=146, Evalue=6e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 91340; Mature: 91340
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCC IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCEEEE MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG HHHCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEEEHHHCCCCCCHHHCCCC QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHEEEEHHCCCC SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAALLGLGGSLGRWGSLSVDGSDT CCCCCCCHHHHHHEEEEECCCCCEEECCCCCCCHHHHHHEEECCCCCCCCEEEEECCCCC HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEEHHHCCHHHHHHHHHHHHCCCCEEE SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS EECCCCCCCCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LNWNQNRTLWRNGAHRKENITSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE EEECCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMSQMGVNIAGGI HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHCCCEEECEE VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEEEC PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ CCCCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR CCCEEEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC >Mature Secondary Structure MKFKQPALLLFIAGVVHCANAHAYTFDASMLGDAAKGVDMSLFNQGVQQPGTYRVDVMVN CCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCHHCCCCHHHHHHHHCCCCCEEEEEEEC GKRVDTRDVVFKLEKDGQGTPFLAPCLTVSQLSRYGVKTEDYPQLWKAAKTPDECADLTA CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHCCCC IPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDGIPAFLMNYSARTTQTDYKMD CCCCEEEEEECCCEEEEECCCEEECCCCCCCCCHHHCCCCCCHHHCCCCCCCCCCCEEEE MERRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGKWQAAYTYAERGLYPLKSRLTLG HHHCCCCCEEEECCCCCCCEEEECCCCCHHHHHCCCCCEEEEEEHHHCCCCCCHHHCCCC QKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPVVRGIARTQARVEVKQNGYTIYNTT CCCCCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCEEEEEEE VAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMFVVPYQTPAIALHQGYLKYSLLAGRYR ECCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEECCCCEEEECCCHHEEEEHHCCCC SSDSATDKAQIAQATLMYGLPWNLTAYGGIQSATHYQAALLGLGGSLGRWGSLSVDGSDT CCCCCCCHHHHHHEEEEECCCCCEEECCCCCCCHHHHHHEEECCCCCCCCEEEEECCCCC HSQRQGEAVQQGASWRLRYSNQLTATGTNFFLTRWQYASQGYNTLSDVLDSYRHDGNRLW CHHHHCHHHHCCCCEEEEECCEEEECCCEEEEEEEEHHHCCHHHHHHHHHHHHCCCCEEE SWRDNLQPSSRTTLMLSQSWGRHLGNLSLTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLS EECCCCCCCCCEEEEEECCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LNWNQNRTLWRNGAHRKENITSLGFSMPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGE EEECCCCCCCCCCCCCCCCHHHCCCCCCHHHCCCCCCEEEEEECCCCCCCCCEEECCCHH AFSQQLDWEVRQSYRADAPPGGGNNSALHLAWNGAYGLLGGDYSYSRAMSQMGVNIAGGI HHHHHCCHHHHHHCCCCCCCCCCCCCEEEEEECCEEEECCCCCHHHHHHHHCCCEEECEE VIHHHGVTLGQPLQGSVALVEAPGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLD EEEECCCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECEEEEEECCCEEEC PSRLPDDAEVTQTDVRVVPTEGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQ CCCCCCCCCEEECCEEEEECCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCEEEEECC DGSAALVDTDSQVYLTGLADKGELTVKWGAQQCRVNYQLPAHKGIAGLYQMSGLCR CCCEEEEECCCEEEEEEECCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8002584 [H]