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The map label for this gene is ybgD [H]

Identifier: 194734167

GI number: 194734167

Start: 3095342

End: 3095929

Strand: Reverse

Name: ybgD [H]

Synonym: SeSA_A3199

Alternate gene names: 194734167

Gene position: 3095929-3095342 (Counterclockwise)

Preceding gene: 194738163

Following gene: 194734483

Centisome position: 65.74

GC content: 50.85

Gene sequence:

>588_bases
ATGCGTAATAAAATAATACTTGCCATGGCGGCTGCCGGTATGATGTATGGCGCTTCTGTATATGCAGTCGATCCACCAAC
AGCAGGCCCGTTCGGCTCAGGTAAAATTACCTTTACTGGCACCATCACCAACTCCCCCTGTGATATCGCACCGGGCGACG
ATGCGATCACCGTTCCGTTTGGACAGATTTCTTACCGTAAACTGAATACCGCCGACGCAACCACGGACTCAAAACCGTTC
ACCATTCATCTGCAGAACTGTGCTTTCGATCCGAATGATGCAGGTTCAAATCCTGCTGGCTCCGCAGGGAAAATGTCTAA
AGTAACCGTCTCTTTCAGTGGCACAGCTGATACCTCAGGTAAAGCTTACGTCAGCACCGGCAGTGCCCAGCATGTTGGTG
TGCAGCTTCTGAAAAGTGACAATACCTCACTGATTACACCCAATACCCCGATGCCGGATGGCGAAGCTCAGCAACTGCAA
GCCGGGAATAACGAACTTAACTTCTTTGCCCGCCTGATAGCCCTGACAAATGCCGCAACTCCTGGCGATGTTAACGCATC
TGTCACCTACACCCTGAAATACCTGTGA

Upstream 100 bases:

>100_bases
TTATTCATACGAATCTTTTCTGAACGCTTTCATTAATACCCTCAGATTTGTTTTCAGCCTTTGCAAAATAATTCTCATTC
ACCCAAAGGACATATTATCT

Downstream 100 bases:

>100_bases
TTTTACGCGGTAAATAACGACAGGGAGAAGCCGTCCACGGAGGGGTTCGGACGGCTTTTATATCTGACCATGCCTGCGGG
CTGTCTGTTACACGGACGAC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNDAGSNPAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKSDNTSLITPNTPMPDGEAQQLQ
AGNNELNFFARLIALTNAATPGDVNASVTYTLKYL

Sequences:

>Translated_195_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNDAGSNPAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKSDNTSLITPNTPMPDGEAQQLQ
AGNNELNFFARLIALTNAATPGDVNASVTYTLKYL
>Mature_195_residues
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTDSKPF
TIHLQNCAFDPNDAGSNPAGSAGKMSKVTVSFSGTADTSGKAYVSTGSAQHVGVQLLKSDNTSLITPNTPMPDGEAQQLQ
AGNNELNFFARLIALTNAATPGDVNASVTYTLKYL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786938, Length=196, Percent_Identity=33.1632653061224, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1789422, Length=198, Percent_Identity=30.3030303030303, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082421, Length=165, Percent_Identity=29.6969696969697, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786746, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790773, Length=199, Percent_Identity=29.1457286432161, Blast_Score=61, Evalue=4e-11,
Organism=Escherichia coli, GI87081805, Length=197, Percent_Identity=25.8883248730964, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 20148; Mature: 20148

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPF
CCCEEEEEEEECCHHHCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
GQISYRKLNTADATTDSKPFTIHLQNCAFDPNDAGSNPAGSAGKMSKVTVSFSGTADTSG
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
KAYVSTGSAQHVGVQLLKSDNTSLITPNTPMPDGEAQQLQAGNNELNFFARLIALTNAAT
EEEEECCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC
PGDVNASVTYTLKYL
CCCCCCEEEEEEEEC
>Mature Secondary Structure
MRNKIILAMAAAGMMYGASVYAVDPPTAGPFGSGKITFTGTITNSPCDIAPGDDAITVPF
CCCEEEEEEEECCHHHCCEEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEC
GQISYRKLNTADATTDSKPFTIHLQNCAFDPNDAGSNPAGSAGKMSKVTVSFSGTADTSG
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCC
KAYVSTGSAQHVGVQLLKSDNTSLITPNTPMPDGEAQQLQAGNNELNFFARLIALTNAAT
EEEEECCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC
PGDVNASVTYTLKYL
CCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7984428 [H]