| Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
|---|---|
| Accession | NC_011059 |
| Length | 2,512,923 |
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The map label for this gene is ydfG [C]
Identifier: 194334597
GI number: 194334597
Start: 1964160
End: 1964969
Strand: Reverse
Name: ydfG [C]
Synonym: Paes_1798
Alternate gene names: 194334597
Gene position: 1964969-1964160 (Counterclockwise)
Preceding gene: 194334598
Following gene: 194334594
Centisome position: 78.19
GC content: 55.56
Gene sequence:
>810_bases ATGAAGCAGGGCGTCGCATGTATTACCGGCAGTACAGATGGCATCGGACGTGCAGCCGCATTTGAACTTGCTGCAGCAGG CCATACCGTCGTGCTGCATGGCCGATCATTCGAGCGTCTTGAGCATACCCGACGAGAGATCGAAGAGCAGACCGGGAACC ACTCCATCCATACCGTCCTGGCGGATTTTACAGACCTTTGTCAGGTGAGACGGATGGCCGATCAGCTTGAGAAATTGTGT TCAGTCATCGATATTCTCATCAACAATGCAGGGGTCTACATGCCCCGCTGCCAGATCACCACAGCAGGGATCGAAACAAC CTTCGCTGTCAATCATCTGGCCCATTTCTGCCTGACCACGCTTCTCGAACCGCTGCTTATTGAAAGCAGGACAAGAGTTG TCAATGTCAGTTCCGTTGATCACCACAGCGCTGGATTTTCAGCCAACAGCATTACCGGCGGCACGCGCTACACCGGCTAT CAGGCATATGCATTCAGCAAACTCTGCAATGTTGCCTTTACCCTCGAACATGCCGACCGCCTGCGCCGCACCGGCGTCAC CGTCAACACCCTCGATCCTGGAATACTGGCCACCAAGCTCCTGCACGCCGGCTGGAGCCTCCAGGGAGACGATGTTAGCT GCGGAGCCCCTCCGCTGCTCTATCTCGCCTGTTCAAGCAAGGTTGCCGACATTACCGGCACCTACTTCGAAAACAATCAC CCCGCCATCTGTTCTCCCATCGCCCACGACCCGGAAATCCGCCGCGAACTCTGGGAAATCAGCGAAGAGATCGTAGAAAG AAACAGCTGA
Upstream 100 bases:
>100_bases TATAGCGCAGGAAGTTATGCAGGCCAGCAGGAGGCGATCAGAAGCTCCGTCGAGCAGATCAGCGACGATATTTTCAACGC AATGGTATCGATCTGGTAGC
Downstream 100 bases:
>100_bases TTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTGGTGATTG GTGATTGGTGATTGGTGAAT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 269
Protein sequence:
>269_residues MKQGVACITGSTDGIGRAAAFELAAAGHTVVLHGRSFERLEHTRREIEEQTGNHSIHTVLADFTDLCQVRRMADQLEKLC SVIDILINNAGVYMPRCQITTAGIETTFAVNHLAHFCLTTLLEPLLIESRTRVVNVSSVDHHSAGFSANSITGGTRYTGY QAYAFSKLCNVAFTLEHADRLRRTGVTVNTLDPGILATKLLHAGWSLQGDDVSCGAPPLLYLACSSKVADITGTYFENNH PAICSPIAHDPEIRRELWEISEEIVERNS
Sequences:
>Translated_269_residues MKQGVACITGSTDGIGRAAAFELAAAGHTVVLHGRSFERLEHTRREIEEQTGNHSIHTVLADFTDLCQVRRMADQLEKLC SVIDILINNAGVYMPRCQITTAGIETTFAVNHLAHFCLTTLLEPLLIESRTRVVNVSSVDHHSAGFSANSITGGTRYTGY QAYAFSKLCNVAFTLEHADRLRRTGVTVNTLDPGILATKLLHAGWSLQGDDVSCGAPPLLYLACSSKVADITGTYFENNH PAICSPIAHDPEIRRELWEISEEIVERNS >Mature_269_residues MKQGVACITGSTDGIGRAAAFELAAAGHTVVLHGRSFERLEHTRREIEEQTGNHSIHTVLADFTDLCQVRRMADQLEKLC SVIDILINNAGVYMPRCQITTAGIETTFAVNHLAHFCLTTLLEPLLIESRTRVVNVSSVDHHSAGFSANSITGGTRYTGY QAYAFSKLCNVAFTLEHADRLRRTGVTVNTLDPGILATKLLHAGWSLQGDDVSCGAPPLLYLACSSKVADITGTYFENNH PAICSPIAHDPEIRRELWEISEEIVERNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI225579078, Length=276, Percent_Identity=35.8695652173913, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI166795268, Length=271, Percent_Identity=35.0553505535055, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI186928839, Length=271, Percent_Identity=35.4243542435424, Blast_Score=124, Evalue=8e-29, Organism=Homo sapiens, GI10190746, Length=286, Percent_Identity=34.2657342657343, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI19923931, Length=247, Percent_Identity=35.2226720647773, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI193804850, Length=282, Percent_Identity=31.9148936170213, Blast_Score=112, Evalue=5e-25, Organism=Homo sapiens, GI7706523, Length=282, Percent_Identity=30.4964539007092, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI146231950, Length=280, Percent_Identity=32.5, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17532791, Length=285, Percent_Identity=29.4736842105263, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17532805, Length=286, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17558006, Length=281, Percent_Identity=31.3167259786477, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI115533172, Length=191, Percent_Identity=38.2198952879581, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI115533174, Length=191, Percent_Identity=38.2198952879581, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71992402, Length=285, Percent_Identity=30.8771929824561, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193207620, Length=284, Percent_Identity=29.5774647887324, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72001364, Length=282, Percent_Identity=28.3687943262411, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17535059, Length=291, Percent_Identity=28.5223367697594, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562904, Length=204, Percent_Identity=31.8627450980392, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17551412, Length=214, Percent_Identity=34.1121495327103, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=32.6732673267327, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17565030, Length=213, Percent_Identity=33.8028169014084, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17560150, Length=201, Percent_Identity=31.8407960199005, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560220, Length=223, Percent_Identity=32.2869955156951, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562910, Length=219, Percent_Identity=33.7899543378995, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI32565532, Length=203, Percent_Identity=33.0049261083744, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17563726, Length=202, Percent_Identity=34.1584158415842, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538486, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562990, Length=202, Percent_Identity=33.1683168316832, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=33.1658291457286, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI212646214, Length=204, Percent_Identity=28.4313725490196, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17562906, Length=205, Percent_Identity=34.1463414634146, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17505416, Length=234, Percent_Identity=28.6324786324786, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17562908, Length=207, Percent_Identity=34.2995169082126, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI25152911, Length=203, Percent_Identity=33.0049261083744, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560332, Length=202, Percent_Identity=31.1881188118812, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17544670, Length=204, Percent_Identity=29.9019607843137, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538480, Length=203, Percent_Identity=32.0197044334975, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17531453, Length=205, Percent_Identity=30.7317073170732, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI72000259, Length=207, Percent_Identity=31.8840579710145, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324820, Length=164, Percent_Identity=30.4878048780488, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=241, Percent_Identity=26.5560165975104, Blast_Score=72, Evalue=9e-14, Organism=Drosophila melanogaster, GI161076371, Length=276, Percent_Identity=35.5072463768116, Blast_Score=135, Evalue=3e-32, Organism=Drosophila melanogaster, GI19921754, Length=283, Percent_Identity=34.2756183745583, Blast_Score=133, Evalue=1e-31, Organism=Drosophila melanogaster, GI22024069, Length=275, Percent_Identity=33.8181818181818, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI24586328, Length=276, Percent_Identity=32.9710144927536, Blast_Score=124, Evalue=6e-29, Organism=Drosophila melanogaster, GI28573296, Length=275, Percent_Identity=33.0909090909091, Blast_Score=119, Evalue=3e-27, Organism=Drosophila melanogaster, GI45553409, Length=279, Percent_Identity=31.5412186379928, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24647948, Length=279, Percent_Identity=31.5412186379928, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24647946, Length=279, Percent_Identity=31.5412186379928, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI20129347, Length=278, Percent_Identity=29.136690647482, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI45554248, Length=274, Percent_Identity=32.8467153284672, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24640117, Length=274, Percent_Identity=32.8467153284672, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24647931, Length=296, Percent_Identity=30.0675675675676, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24656154, Length=278, Percent_Identity=29.4964028776978, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI19922628, Length=278, Percent_Identity=29.4964028776978, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI24644339, Length=204, Percent_Identity=30.8823529411765, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=31.25, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21357041, Length=207, Percent_Identity=29.4685990338164, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI23397609, Length=200, Percent_Identity=30.5, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29419; Mature: 29419
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQGVACITGSTDGIGRAAAFELAAAGHTVVLHGRSFERLEHTRREIEEQTGNHSIHTVL CCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHH ADFTDLCQVRRMADQLEKLCSVIDILINNAGVYMPRCQITTAGIETTFAVNHLAHFCLTT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHH LLEPLLIESRTRVVNVSSVDHHSAGFSANSITGGTRYTGYQAYAFSKLCNVAFTLEHADR HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LRRTGVTVNTLDPGILATKLLHAGWSLQGDDVSCGAPPLLYLACSSKVADITGTYFENNH HHHCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCC PAICSPIAHDPEIRRELWEISEEIVERNS CCEECCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKQGVACITGSTDGIGRAAAFELAAAGHTVVLHGRSFERLEHTRREIEEQTGNHSIHTVL CCCCCEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHH ADFTDLCQVRRMADQLEKLCSVIDILINNAGVYMPRCQITTAGIETTFAVNHLAHFCLTT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCCHHHHHHHHHHHHHHHH LLEPLLIESRTRVVNVSSVDHHSAGFSANSITGGTRYTGYQAYAFSKLCNVAFTLEHADR HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LRRTGVTVNTLDPGILATKLLHAGWSLQGDDVSCGAPPLLYLACSSKVADITGTYFENNH HHHCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCC PAICSPIAHDPEIRRELWEISEEIVERNS CCEECCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8383668 [H]