Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
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Accession | NC_011059 |
Length | 2,512,923 |
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The map label for this gene is yqeV [H]
Identifier: 194334590
GI number: 194334590
Start: 1954264
End: 1955622
Strand: Reverse
Name: yqeV [H]
Synonym: Paes_1790
Alternate gene names: 194334590
Gene position: 1955622-1954264 (Counterclockwise)
Preceding gene: 194334592
Following gene: 194334589
Centisome position: 77.82
GC content: 52.02
Gene sequence:
>1359_bases ATGGTTAAAAAAAGAGATCGTATAAAAACTATTTTTGCTGTTACTCTTGGCTGTAAACTCAATTACGCTGAAACATCGTC TATTCTCGAGCGTTTCGTGAAGTGTGGCTGGCGGATTGCATCGAAAGATGAACAGCCCGATGTTGTTGTTGTGCACACCT GTGCAGTCACAGGCCAGGCGGAGCAGAAGTCCCGTCAGCAGATACGGCGTATGATCAGAACATATCCGGCAAGTCGGATT GTCGTCATCGGGTGCTATGCTCAACTCTCTCCTGAACGTATAGAAAATATCGAAGGTGTCGATGTTATTCTTGGTTCAAA AGGGAAGTTTGACATCGAAAAGTATTGTGCCGCAGAAGAGACCGGGGTGTTCATCGATGTTGCGCCTGTTGCTTCGATAG CATCGCCTGTCCCTGCGCATTCGCTTATAGAAAAACGGGAGATGGGGCGTAGCCGTGCATTTTTAAAAATTCAGGATGGT TGCGACTACGGATGCGGCTACTGCGCAATTCCTCTTGCCCGGGGTCGTTCGCTTTCCATTGATCCGGATGTCGTGCTCGA TGGGGCCCGTGCGCTTGCCGGAGCCGGGTATTGCGAGATTGTGCTGACCGGCGTCAATATCGCGGCCTACCGTTTCGGTG AACTCGATTTCGCAGGACTTCTTCGTCTCCTTGACCAGGTCGATGTGCAGCGCATAAGGGTCAGTTCGATAGAGCCGGAC TGCCTTACCGACGAGCTGATCGATGTCGTTGCTTCCTCTCAAAGAATCATGCCCCATTTTCACCTCCCGCTTCAGGGTGG ATCGGATGTCGTTCTGCGCTCCATGGCAAGGCGCTATACCACCGCATACTATCGTGACCGTCTTTTCCGGGCGGTCAGGC GTATTTCCGGTTGTGCCGTGGGCGCTGACGTGATGACCGGTTATCCTGGCGAAACCGGGGAGGATTTCCAGTCAGCATAC GATTTCATTGCGTCGCTTCCCCTCGCCTATCTGCATATTTTCACCTGTTCAATCCGGCCTGGAACCGCACTGGCGCGACA GGTTCAGAGCGGCCTTCGTCAGCCTGTCGCTCACGATATTGTACGTCATCGAAGTCGGCTTCTTCGTGAGCTTGGTGAAC GCAAAAAGCGTGAATTTCTTGCCTCATGTGTCGGTCGTGAGGTCAATGTACTCATTGAGGAATGCTCTTGTGGAGAGGGT TCAGAGCTCTTTTGTTCAGGTTATACCCCGCACTATATACGTGTGCGGATAGCCATAGAGGGCTCTTTGTCCACAGATCC GCTCATTGGCAGGGAGCGACGGGTCAAGGTGCTGAACGTCAGCGGTGATTTGGATTTAGAAGGCATATTCGTAACTTGA
Upstream 100 bases:
>100_bases TACGTTATATTCATTTTGCCGACGAGAAACCCGGTAAGTAAAATAAGTGTATGACATCGGTTTATTGTCGGTATACATAT TTCGTCTTGAACGCTTTGTT
Downstream 100 bases:
>100_bases AAATCTGTTTTGCCTTAGTACGTTCCAGCCGACAGAGCTCTCTTTTTGAGACGGCTGGCGGTTGTTGCAGTTTCACTAAC CCGAAAACATATAGCATCAA
Product: RNA modification enzyme, MiaB family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MVKKRDRIKTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQIRRMIRTYPASRI VVIGCYAQLSPERIENIEGVDVILGSKGKFDIEKYCAAEETGVFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDG CDYGCGYCAIPLARGRSLSIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELDFAGLLRLLDQVDVQRIRVSSIEPD CLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAVRRISGCAVGADVMTGYPGETGEDFQSAY DFIASLPLAYLHIFTCSIRPGTALARQVQSGLRQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEG SELFCSGYTPHYIRVRIAIEGSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT
Sequences:
>Translated_452_residues MVKKRDRIKTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQIRRMIRTYPASRI VVIGCYAQLSPERIENIEGVDVILGSKGKFDIEKYCAAEETGVFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDG CDYGCGYCAIPLARGRSLSIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELDFAGLLRLLDQVDVQRIRVSSIEPD CLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAVRRISGCAVGADVMTGYPGETGEDFQSAY DFIASLPLAYLHIFTCSIRPGTALARQVQSGLRQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEG SELFCSGYTPHYIRVRIAIEGSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT >Mature_452_residues MVKKRDRIKTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQAEQKSRQQIRRMIRTYPASRI VVIGCYAQLSPERIENIEGVDVILGSKGKFDIEKYCAAEETGVFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDG CDYGCGYCAIPLARGRSLSIDPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELDFAGLLRLLDQVDVQRIRVSSIEPD CLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAVRRISGCAVGADVMTGYPGETGEDFQSAY DFIASLPLAYLHIFTCSIRPGTALARQVQSGLRQPVAHDIVRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEG SELFCSGYTPHYIRVRIAIEGSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT
Specific function: Unknown
COG id: COG0621
COG function: function code J; 2-methylthioadenine synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRAM domain [H]
Homologues:
Organism=Homo sapiens, GI28872784, Length=383, Percent_Identity=27.154046997389, Blast_Score=135, Evalue=8e-32, Organism=Homo sapiens, GI28872782, Length=383, Percent_Identity=27.154046997389, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI93277076, Length=398, Percent_Identity=24.8743718592965, Blast_Score=112, Evalue=6e-25, Organism=Escherichia coli, GI1786882, Length=458, Percent_Identity=28.6026200873362, Blast_Score=156, Evalue=3e-39, Organism=Escherichia coli, GI1787057, Length=397, Percent_Identity=24.9370277078086, Blast_Score=106, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17553146, Length=423, Percent_Identity=24.5862884160757, Blast_Score=125, Evalue=6e-29, Organism=Caenorhabditis elegans, GI71996771, Length=198, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI21356207, Length=430, Percent_Identity=25.8139534883721, Blast_Score=132, Evalue=4e-31, Organism=Drosophila melanogaster, GI19922432, Length=457, Percent_Identity=26.2582056892779, Blast_Score=114, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR020612 - InterPro: IPR013848 - InterPro: IPR006467 - InterPro: IPR007197 - InterPro: IPR002792 [H]
Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004 [H]
EC number: NA
Molecular weight: Translated: 50018; Mature: 50018
Theoretical pI: Translated: 8.01; Mature: 8.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKKRDRIKTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQA CCCCHHHHHEEEEEEECCEECHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEEECCCH EQKSRQQIRRMIRTYPASRIVVIGCYAQLSPERIENIEGVDVILGSKGKFDIEKYCAAEE HHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCEEEECCCCCCCHHHHHCCCC TGVFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDGCDYGCGYCAIPLARGRSLSI CCEEEEECCHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCC DPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELDFAGLLRLLDQVDVQRIRVSSIEPD CCHHEECCHHHHHCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC CLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAVRRISGCAV HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GADVMTGYPGETGEDFQSAYDFIASLPLAYLHIFTCSIRPGTALARQVQSGLRQPVAHDI CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCHHHHHH VRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEGSELFCSGYTPHYIRVRIAIE HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCCCCEEECCCCCCEEEEEEEEE GSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEC >Mature Secondary Structure MVKKRDRIKTIFAVTLGCKLNYAETSSILERFVKCGWRIASKDEQPDVVVVHTCAVTGQA CCCCHHHHHEEEEEEECCEECHHHHHHHHHHHHHCCCEECCCCCCCCEEEEEEEEECCCH EQKSRQQIRRMIRTYPASRIVVIGCYAQLSPERIENIEGVDVILGSKGKFDIEKYCAAEE HHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHCCCCCCEEEECCCCCCCHHHHHCCCC TGVFIDVAPVASIASPVPAHSLIEKREMGRSRAFLKIQDGCDYGCGYCAIPLARGRSLSI CCEEEEECCHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCC DPDVVLDGARALAGAGYCEIVLTGVNIAAYRFGELDFAGLLRLLDQVDVQRIRVSSIEPD CCHHEECCHHHHHCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC CLTDELIDVVASSQRIMPHFHLPLQGGSDVVLRSMARRYTTAYYRDRLFRAVRRISGCAV HHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GADVMTGYPGETGEDFQSAYDFIASLPLAYLHIFTCSIRPGTALARQVQSGLRQPVAHDI CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCHHHHHH VRHRSRLLRELGERKKREFLASCVGREVNVLIEECSCGEGSELFCSGYTPHYIRVRIAIE HHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCCCCEEECCCCCCEEEEEEEEE GSLSTDPLIGRERRVKVLNVSGDLDLEGIFVT CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9023197; 9384377 [H]