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The map label for this gene is csmJ [H]

Identifier: 194333597

GI number: 194333597

Start: 812898

End: 813584

Strand: Reverse

Name: csmJ [H]

Synonym: Paes_0763

Alternate gene names: 194333597

Gene position: 813584-812898 (Counterclockwise)

Preceding gene: 194333599

Following gene: 194333596

Centisome position: 32.38

GC content: 47.74

Gene sequence:

>687_bases
ATGGTTATTTATATAAACGACAAGGCATATGAAGCGCGTCCGGGAGACCTGCTTCTTGATGTGGCAAAAAAAAACAAAGC
CCATATAGGCTATATTTGCGGTGGCGGAGGTATCTGTCAAAGTTGTTTTGTCTATGTCCGGGAAGGGATGGACTGTTTAT
CTGAAAAGAGTTCAGTAGAAAATGCCTTTATTTCAGACAAACTCCAGGATGCCGGGGGCAGACTTGCCTGTCAGACAAAA
ATTGTCAAAGAAGGCAACATCCGACTACTTTCCAGAGCCGAGCAGCTGCGCAGAATTGTACTGGGTCTCAATATTCCTGG
CTTTATCAGCTATGCACAGACTATCGGCTATAATGTCTTCAACCAACTTCCCTCCGGTGTAGGCAACATCGTCTCCCGTG
TGCAGGAAGGAAAGATTGACCCGGGCCGCTCGCTCCAGAATATCGCAATGGGTATAGGCCCTGCAGCTCTTTTAGCTGGA
AACACGATCATGGAGAATTTTTCATTCCTTGAGGGACCTGTTACTCTGGTAAGCAACGGCGCAAAAGGTGTTGTCGATGC
GGCATCAGATACCGTTTGTCAGATATCAGGCGGACGCCTGCATCTTCCCGGAACCAGCTGTAAGACCTGTGAAGAGGCTC
CGGTTATCGAGAGAGTTCAGATTACCACAGGCAAAACGTCACAATAA

Upstream 100 bases:

>100_bases
GTATAAATAGAGGATTCTTCTTGCGCGAAAATTGCTTATATTTACACGAACAAGAACGATGATTTTCTTGATCATAAGCT
AACAGCTAAAACCTTGCAAA

Downstream 100 bases:

>100_bases
CTCCGGAACCACTATCTCCGGAATGTTTTCTAATAAGTACGATTTAGTTTTCATGACCTATACCATAAGGATTCTGAGAT
ACAATCCGCAATCAGATACT

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MVIYINDKAYEARPGDLLLDVAKKNKAHIGYICGGGGICQSCFVYVREGMDCLSEKSSVENAFISDKLQDAGGRLACQTK
IVKEGNIRLLSRAEQLRRIVLGLNIPGFISYAQTIGYNVFNQLPSGVGNIVSRVQEGKIDPGRSLQNIAMGIGPAALLAG
NTIMENFSFLEGPVTLVSNGAKGVVDAASDTVCQISGGRLHLPGTSCKTCEEAPVIERVQITTGKTSQ

Sequences:

>Translated_228_residues
MVIYINDKAYEARPGDLLLDVAKKNKAHIGYICGGGGICQSCFVYVREGMDCLSEKSSVENAFISDKLQDAGGRLACQTK
IVKEGNIRLLSRAEQLRRIVLGLNIPGFISYAQTIGYNVFNQLPSGVGNIVSRVQEGKIDPGRSLQNIAMGIGPAALLAG
NTIMENFSFLEGPVTLVSNGAKGVVDAASDTVCQISGGRLHLPGTSCKTCEEAPVIERVQITTGKTSQ
>Mature_228_residues
MVIYINDKAYEARPGDLLLDVAKKNKAHIGYICGGGGICQSCFVYVREGMDCLSEKSSVENAFISDKLQDAGGRLACQTK
IVKEGNIRLLSRAEQLRRIVLGLNIPGFISYAQTIGYNVFNQLPSGVGNIVSRVQEGKIDPGRSLQNIAMGIGPAALLAG
NTIMENFSFLEGPVTLVSNGAKGVVDAASDTVCQISGGRLHLPGTSCKTCEEAPVIERVQITTGKTSQ

Specific function: Could play a direct role in the oxidation or reduction of the quenching species formed in the chlorosome [H]

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Chlorosome [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 24252; Mature: 24252

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIYINDKAYEARPGDLLLDVAKKNKAHIGYICGGGGICQSCFVYVREGMDCLSEKSSVE
CEEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
NAFISDKLQDAGGRLACQTKIVKEGNIRLLSRAEQLRRIVLGLNIPGFISYAQTIGYNVF
HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
NQLPSGVGNIVSRVQEGKIDPGRSLQNIAMGIGPAALLAGNTIMENFSFLEGPVTLVSNG
HHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHEECCC
AKGVVDAASDTVCQISGGRLHLPGTSCKTCEEAPVIERVQITTGKTSQ
CCCEEECCCCCEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MVIYINDKAYEARPGDLLLDVAKKNKAHIGYICGGGGICQSCFVYVREGMDCLSEKSSVE
CEEEEECCCCCCCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
NAFISDKLQDAGGRLACQTKIVKEGNIRLLSRAEQLRRIVLGLNIPGFISYAQTIGYNVF
HHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
NQLPSGVGNIVSRVQEGKIDPGRSLQNIAMGIGPAALLAGNTIMENFSFLEGPVTLVSNG
HHCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHEECCC
AKGVVDAASDTVCQISGGRLHLPGTSCKTCEEAPVIERVQITTGKTSQ
CCCEEECCCCCEEEECCCEEECCCCCCCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 2Fe-2S Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11148041; 12093901 [H]