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The map label for this gene is radC [C]

Identifier: 194333569

GI number: 194333569

Start: 784468

End: 785139

Strand: Reverse

Name: radC [C]

Synonym: Paes_0735

Alternate gene names: 194333569

Gene position: 785139-784468 (Counterclockwise)

Preceding gene: 194333570

Following gene: 194333567

Centisome position: 31.24

GC content: 48.96

Gene sequence:

>672_bases
ATGCGAATTCATGACCTTGACCCCGAAAACCGGCCGAGGGAACGCTTTCTCCGCTCCGGAGTTTCGGCGCTCAGTTCGGC
AGAACTGATGGCACTTATCCTCAAAACGGGAACAAAAAAGCATAACATTATCGAGACCTGCCAGGAAATGCTCTCCATCT
ACGGCCTGGAAAAGCTGGCAGATCTGTCACTCGCGGAACTACAGAAAATAAATGGGATAGGTCCGGCCAAAGCCATGCAG
ATCAAAGCGGTATTCGAACTCCATCGGCGAATGCATTTCAGACGCAACACAAACAAAAAAATCCGCTCAGCCAGAGATGT
GTTTGATTACATGCAGGGCAGGCTACCCGATGAGATGCGGGAACACCTTTTTCTGCTCAACCTGAACACAAAAAACCAGA
TTATCCGGCATGAAATCATATCAGTCGGAACGCTGAACGCGTCACTCATTCACCCAAGGGAAATCTTCAAAGAGGCTATC
AGAGAGAGCGCCCACGCAATCATCGTTGTGCACAATCATCCATCAGGCGACGTTGAGGCAAGCAATGCCGACAAGCAGGT
TACTGCCGTTTTGAAAAAAGCGGGCTCACTCCTGCAGATTGAGCTGCTGGATCATGTCATTATCGGAAGAGAGACCTATT
TCAGTTTCAGAGAGCACTCTCTTCTTGGATAA

Upstream 100 bases:

>100_bases
TATTTCAGAATTACGCTTTTTTCGCTTTGAGCTTAAACCACTTTTTTATAGGTTATAGAGAAAAAAGATCAACCACAGCC
TCGTTGTCCCCCAACATCAC

Downstream 100 bases:

>100_bases
CGAAAGGAACTGACTTTCGGCAGACATCTGCTATCCTTCCGACAACGAAAATAGTGCAGAAAGCACGCAGAAACTGGTTT
AGATAACAAAGGCGGAGAAG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYGLEKLADLSLAELQKINGIGPAKAMQ
IKAVFELHRRMHFRRNTNKKIRSARDVFDYMQGRLPDEMREHLFLLNLNTKNQIIRHEIISVGTLNASLIHPREIFKEAI
RESAHAIIVVHNHPSGDVEASNADKQVTAVLKKAGSLLQIELLDHVIIGRETYFSFREHSLLG

Sequences:

>Translated_223_residues
MRIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYGLEKLADLSLAELQKINGIGPAKAMQ
IKAVFELHRRMHFRRNTNKKIRSARDVFDYMQGRLPDEMREHLFLLNLNTKNQIIRHEIISVGTLNASLIHPREIFKEAI
RESAHAIIVVHNHPSGDVEASNADKQVTAVLKKAGSLLQIELLDHVIIGRETYFSFREHSLLG
>Mature_223_residues
MRIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYGLEKLADLSLAELQKINGIGPAKAMQ
IKAVFELHRRMHFRRNTNKKIRSARDVFDYMQGRLPDEMREHLFLLNLNTKNQIIRHEIISVGTLNASLIHPREIFKEAI
RESAHAIIVVHNHPSGDVEASNADKQVTAVLKKAGSLLQIELLDHVIIGRETYFSFREHSLLG

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=38.0281690140845, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1788997, Length=128, Percent_Identity=39.0625, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=37.5886524822695, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI2367100, Length=103, Percent_Identity=43.6893203883495, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y735_PROA2 (B4S6M7)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002015429.1
- ProteinModelPortal:   B4S6M7
- SMR:   B4S6M7
- GeneID:   6460195
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_0735
- HOGENOM:   HBG751042
- OMA:   GRTHEVF
- ProtClustDB:   PRK00024
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25427; Mature: 25427

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYGLEKLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
DLSLAELQKINGIGPAKAMQIKAVFELHRRMHFRRNTNKKIRSARDVFDYMQGRLPDEMR
HCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
EHLFLLNLNTKNQIIRHEIISVGTLNASLIHPREIFKEAIRESAHAIIVVHNHPSGDVEA
HCEEEEECCCHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
SNADKQVTAVLKKAGSLLQIELLDHVIIGRETYFSFREHSLLG
CCCHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRIHDLDPENRPRERFLRSGVSALSSAELMALILKTGTKKHNIIETCQEMLSIYGLEKLA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
DLSLAELQKINGIGPAKAMQIKAVFELHRRMHFRRNTNKKIRSARDVFDYMQGRLPDEMR
HCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
EHLFLLNLNTKNQIIRHEIISVGTLNASLIHPREIFKEAIRESAHAIIVVHNHPSGDVEA
HCEEEEECCCHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
SNADKQVTAVLKKAGSLLQIELLDHVIIGRETYFSFREHSLLG
CCCHHHHHHHHHHCCCEEEHHHHHHHHHCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA