Click here to switch to the map view.

The map label for this gene is 194333481

Identifier: 194333481

GI number: 194333481

Start: 681809

End: 682090

Strand: Reverse

Name: 194333481

Synonym: Paes_0642

Alternate gene names: NA

Gene position: 682090-681809 (Counterclockwise)

Preceding gene: 194333482

Following gene: 194333471

Centisome position: 27.14

GC content: 48.94

Gene sequence:

>282_bases
ATGAAGTACCATGTCACCTATCCGAATGCCTTTGATACGCTTGAAGATGCCCGCCGCTGGATGGGCGACTTCGTGCACTG
GTACAATACCGAACACCTGCATTCTTCAATTGGCTACGTAACACCGCATCAGATGCGACACGGACAGGCAGAATCGATTT
TCGAACTTCGAAATGAAGCAATAAATCAGGCCAGACAGTTGCATCCTGAACGCTGGGGTTCACGATCAGCAAAGCAATGG
ATTGTTAACCGGGAAGTAGTGCTCAACCCGGACAAAAAGTGA

Upstream 100 bases:

>100_bases
GCTTGAGCCCAGTGCGGTGAAAGTCGCACGCTGGGTTCTTAGGGGACGGTGGCGTAGCAATGCGCCGCCGTTACCCGACA
TCGAGTCGCTGTTCAAGACG

Downstream 100 bases:

>100_bases
ATAAATTTTTTTAAAAAAATGCGACATCTCTATTGACATAAAGCGGGACTAGAATTTTTATTTTCCACTTGCGCCTAGAA
AAGATTTTTTTCTGGCAGAT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; ISRin3 Transposase; Integrase; Integrase Catalytic Domain-Containing Protein; IS5 Family Transposase OrfB

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKYHVTYPNAFDTLEDARRWMGDFVHWYNTEHLHSSIGYVTPHQMRHGQAESIFELRNEAINQARQLHPERWGSRSAKQW
IVNREVVLNPDKK

Sequences:

>Translated_93_residues
MKYHVTYPNAFDTLEDARRWMGDFVHWYNTEHLHSSIGYVTPHQMRHGQAESIFELRNEAINQARQLHPERWGSRSAKQW
IVNREVVLNPDKK
>Mature_93_residues
MKYHVTYPNAFDTLEDARRWMGDFVHWYNTEHLHSSIGYVTPHQMRHGQAESIFELRNEAINQARQLHPERWGSRSAKQW
IVNREVVLNPDKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11159; Mature: 11159

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYHVTYPNAFDTLEDARRWMGDFVHWYNTEHLHSSIGYVTPHQMRHGQAESIFELRNEA
CEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHH
INQARQLHPERWGSRSAKQWIVNREVVLNPDKK
HHHHHHCCCHHCCCHHHHHHHHCCCEEECCCCC
>Mature Secondary Structure
MKYHVTYPNAFDTLEDARRWMGDFVHWYNTEHLHSSIGYVTPHQMRHGQAESIFELRNEA
CEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHH
INQARQLHPERWGSRSAKQWIVNREVVLNPDKK
HHHHHHCCCHHCCCHHHHHHHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA