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The map label for this gene is ykfC [H]

Identifier: 194333471

GI number: 194333471

Start: 670904

End: 672139

Strand: Reverse

Name: ykfC [H]

Synonym: Paes_0629

Alternate gene names: 194333471

Gene position: 672139-670904 (Counterclockwise)

Preceding gene: 194333481

Following gene: 194333460

Centisome position: 26.75

GC content: 52.18

Gene sequence:

>1236_bases
ATGACACAGGTAAAGCCGTTTCCCATCACCAAAAGACAGGTATGGGAAGCATACAAACGAGTGAAAGCCAATCAGGGTGG
GGCAGGAGTAGACGGGCAGTCGATAGCCGAGTTTGACGAGGCGATGGAAAATAACCTCTACAAGCTATGGAATCGATTGG
CATCGGGAAGTTACATGCCCCCTCCGGTCAAACGGGTAGAAATACCTAAAGCCGATGGAGGTCTACGTCCTCTTGGCGTG
CCGACGGTGGCTGACCGGATAGCCCAGACAGTGGTAAAACAGGTATTGGAGCCAGAAATGGAGCGGCATTTCCACCCCGA
TTCCTATGGGTATCGGCCGGGAAAATCAGCTCATCAAGCGGTAGGCGAAGCCCGCAAGCGTTGCTGGCGCAATGACTGGG
TAGTTGATCTTGATATTCGCGGCTTTTTTGATGCAATCGATCATGAGCTGTTGATGCGAGCCCTGCACAGTCATACGCAA
GAGCGCTGGGTGCTGCTGTATATCGAAAGGTGGCTGAAAGCACCGGTGCAGTTACCTGATGGTACCCTCCAGAAGAGGGG
AGCAGGAACCCCGCAAGGGGGAGTTATAAGCCCGCTCTTGGCTAACCTGATGCTGCATTACACATTCGATGCATGGATGC
AAAGGATGTTTCCGCATGTTTCGTTTGAAAGATATGCGGATGATGGAGTATGCCACTGTCGAACCAGAGAACAGGCCGAA
GAACTGATGGCAGCGTTGAAACAGCGCTTTGTGGACTGCAAGCTGGAACTTCACCCGGAAAAGACCCGCATCATTTATTG
TAAAGATGATGATCGGTGTGGCAACTATCCGGTAACGTCGTTCGATTTCCTGGGGTTCACCTTCCGGGCTCGGCGATCAA
GGAACCGGTGGGGAAAGTATTTCATCAACTTCAGTCCGGCAATCAGCAACAAGGCAGGAAAACGCATCCGTCAGGAAGTC
AGGAGCTGGAAACTGCATCTTCGTAGTGATAAGGCACTTGAAGACCTGGCAAGAATGTTCAACGCGCATATCCGGGGATG
GGTCAACTACTACAGCGTATTCTACAAGTCTGCGTTGTATCCAACCCTGCGGCATATTGACCGCAAACTCACCCTCTGGG
CAACGCGGAAGTTCAAAAGGTTGAAAGGTCACCGACGCCGGGCAACGCATGTGTTGGAGAGCATAGCCCGACGGAACACT
CGAATGTTTGCCCATTGGCCATTGCTGTATGGGTAG

Upstream 100 bases:

>100_bases
TACTCTGTAGTAGTGTAGAAGGTTCTGTAATGGAGCTGGAGCAAAGGGAGTACCCTATCTGGCCTGATGTATGTGGTCAA
CCAGTAAAGGGAGGAACCGC

Downstream 100 bases:

>100_bases
GCTGGATAGGAGGAGCCGGATGAGCTGAGAGGTTCACGTCCGTATCTGTGAGCACCCCGGGGGGTGGTTCCCCGGGGTGA
CTCGACTGCCGCTCTTTAAT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMPPPVKRVEIPKADGGLRPLGV
PTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQAVGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQ
ERWVLLYIERWLKAPVQLPDGTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAE
ELMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKYFINFSPAISNKAGKRIRQEV
RSWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALYPTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNT
RMFAHWPLLYG

Sequences:

>Translated_411_residues
MTQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMPPPVKRVEIPKADGGLRPLGV
PTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQAVGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQ
ERWVLLYIERWLKAPVQLPDGTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAE
ELMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKYFINFSPAISNKAGKRIRQEV
RSWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALYPTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNT
RMFAHWPLLYG
>Mature_410_residues
TQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMPPPVKRVEIPKADGGLRPLGVP
TVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQAVGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQE
RWVLLYIERWLKAPVQLPDGTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAEE
LMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKYFINFSPAISNKAGKRIRQEVR
SWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALYPTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNTR
MFAHWPLLYG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=198, Percent_Identity=30.3030303030303, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6226521, Length=258, Percent_Identity=26.7441860465116, Blast_Score=107, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 48143; Mature: 48012

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPVKRVEIPKADGGLRPLGVPTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQA
CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCHHHHH
VGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQERWVLLYIERWLKAPVQLPD
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
GTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAE
CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEECCCHHHHH
ELMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKY
HHHHHHHHHHHCCEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
FINFSPAISNKAGKRIRQEVRSWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALY
EEEECHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNTRMFAHWPLLYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
>Mature Secondary Structure 
TQVKPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMP
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PPVKRVEIPKADGGLRPLGVPTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQA
CCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCHHHHH
VGEARKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQERWVLLYIERWLKAPVQLPD
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
GTLQKRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDGVCHCRTREQAE
CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEECCCHHHHH
ELMAALKQRFVDCKLELHPEKTRIIYCKDDDRCGNYPVTSFDFLGFTFRARRSRNRWGKY
HHHHHHHHHHHCCEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCE
FINFSPAISNKAGKRIRQEVRSWKLHLRSDKALEDLARMFNAHIRGWVNYYSVFYKSALY
EEEECHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PTLRHIDRKLTLWATRKFKRLKGHRRRATHVLESIARRNTRMFAHWPLLYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]