Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
---|---|
Accession | NC_011059 |
Length | 2,512,923 |
Click here to switch to the map view.
The map label for this gene is 194333409
Identifier: 194333409
GI number: 194333409
Start: 608756
End: 609712
Strand: Reverse
Name: 194333409
Synonym: Paes_0566
Alternate gene names: NA
Gene position: 609712-608756 (Counterclockwise)
Preceding gene: 194333410
Following gene: 194333404
Centisome position: 24.26
GC content: 51.41
Gene sequence:
>957_bases ATGACCACTATGAAAACGCATCAGAAACCTCGAACACCGCTCCCTGCGCCCCACCAGCTGCTGATCTGCATGCTCCTCTT GCTCAGCGGGTGTAGCGCCCCACAAAAAAATCTTCCGTCAGAAGAAAGCACAACAAAAAACATCGGGATCCTGCTGCTCA ACCATGGCTCAAGATCGGAGCGGTGGCAAAAGAATCTTCTCGACCTTGAACATAACGTAGCTGACAGAATACTGACAATC GAAGGCATCGATGGAGTCAGGACAGCCTTCATGGAACACGCCACGCCATCGATCGCCGATGCACTGGAATCGTTCGATCA TGAAGGCTATCGCCATATCGTCGTCATTCCAGTCTTTCTGACCATCGGCACTCATATGTTCGACGACATCCCGACAATCA TCGGCATGAAAGACAATCCGGCATCAATCCAACATTTGAAACTGGAAGGAATAGCTCGCTACAAACCAAAGGCCAAAACC CACCTGGCGCCGTCCCTCGACTTTTCCGGTCTCCTGAAAAGTAACGCCTTACGAAGAACGACAGCTCTCTCAAACAACCC GGAGAACGAAGGCCTGGTTCTTGTCGGGTATGGTTCGACCCACTTCGACAACCAATGGTCTGAACTGTTTGACGAGGTCG GATCATACGTATGCCGGAAAACGGGAATCACTGAGTACACCACGGCATGGTGCGGCCATATCGCCCATTACAGCTCCGAC TCGACCACCGTTGCAGTCAACAGGATTCTCGACACCAAAGAACGGGCGATCGTCATCCCTCTGCTGGTATCACAGAGTGA ACAGTTCCAAATAAAAATTATCGGTAACGGAGTGTCAGCCGTTGAAGGATACAGCGAACGTGTAGGCTACAAACCAGACG CCATCCTGCCCGACCCGAAACTCGAAGAATGGGTTATCGAAACGGCAAGGAACTACGCACAGAGCACCGCAGAATAA
Upstream 100 bases:
>100_bases CCTCCCCTGGTAGCACTCGTCCTCCAAAACATGCACTAAGCTCAGCCTCCCACCGGGCTCTCCACACTCCTCGAGAGCCC GGAAAGGCAAGACCAATCCA
Downstream 100 bases:
>100_bases GACCTCATCAAAAAAAAGTCCCGCGGAACGCCATTGTGCTCCACGGGACCAGCCATACAGATGAGCCAATGCCTTACAGG TTCATTCTTACTCCTGCAAA
Product: cobalamin (vitamin B12) biosynthesis CbiX protein
Products: NA
Alternate protein names: Sirohydrochlorin Cobaltochelatase
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MTTMKTHQKPRTPLPAPHQLLICMLLLLSGCSAPQKNLPSEESTTKNIGILLLNHGSRSERWQKNLLDLEHNVADRILTI EGIDGVRTAFMEHATPSIADALESFDHEGYRHIVVIPVFLTIGTHMFDDIPTIIGMKDNPASIQHLKLEGIARYKPKAKT HLAPSLDFSGLLKSNALRRTTALSNNPENEGLVLVGYGSTHFDNQWSELFDEVGSYVCRKTGITEYTTAWCGHIAHYSSD STTVAVNRILDTKERAIVIPLLVSQSEQFQIKIIGNGVSAVEGYSERVGYKPDAILPDPKLEEWVIETARNYAQSTAE
Sequences:
>Translated_318_residues MTTMKTHQKPRTPLPAPHQLLICMLLLLSGCSAPQKNLPSEESTTKNIGILLLNHGSRSERWQKNLLDLEHNVADRILTI EGIDGVRTAFMEHATPSIADALESFDHEGYRHIVVIPVFLTIGTHMFDDIPTIIGMKDNPASIQHLKLEGIARYKPKAKT HLAPSLDFSGLLKSNALRRTTALSNNPENEGLVLVGYGSTHFDNQWSELFDEVGSYVCRKTGITEYTTAWCGHIAHYSSD STTVAVNRILDTKERAIVIPLLVSQSEQFQIKIIGNGVSAVEGYSERVGYKPDAILPDPKLEEWVIETARNYAQSTAE >Mature_317_residues TTMKTHQKPRTPLPAPHQLLICMLLLLSGCSAPQKNLPSEESTTKNIGILLLNHGSRSERWQKNLLDLEHNVADRILTIE GIDGVRTAFMEHATPSIADALESFDHEGYRHIVVIPVFLTIGTHMFDDIPTIIGMKDNPASIQHLKLEGIARYKPKAKTH LAPSLDFSGLLKSNALRRTTALSNNPENEGLVLVGYGSTHFDNQWSELFDEVGSYVCRKTGITEYTTAWCGHIAHYSSDS TTVAVNRILDTKERAIVIPLLVSQSEQFQIKIIGNGVSAVEGYSERVGYKPDAILPDPKLEEWVIETARNYAQSTAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35297; Mature: 35165
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTMKTHQKPRTPLPAPHQLLICMLLLLSGCSAPQKNLPSEESTTKNIGILLLNHGSRSE CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEEEECCCCHH RWQKNLLDLEHNVADRILTIEGIDGVRTAFMEHATPSIADALESFDHEGYRHIVVIPVFL HHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEHHH TIGTHMFDDIPTIIGMKDNPASIQHLKLEGIARYKPKAKTHLAPSLDFSGLLKSNALRRT HHHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHCCCCCHHCCCCCCCHHHHHHHHHHHHH TALSNNPENEGLVLVGYGSTHFDNQWSELFDEVGSYVCRKTGITEYTTAWCGHIAHYSSD HHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC STTVAVNRILDTKERAIVIPLLVSQSEQFQIKIIGNGVSAVEGYSERVGYKPDAILPDPK CCEEEHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCHHHHCCHHHHCCCCCCCCCCCCC LEEWVIETARNYAQSTAE HHHHHHHHHHHHHHHCCC >Mature Secondary Structure TTMKTHQKPRTPLPAPHQLLICMLLLLSGCSAPQKNLPSEESTTKNIGILLLNHGSRSE CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEEEECCCCHH RWQKNLLDLEHNVADRILTIEGIDGVRTAFMEHATPSIADALESFDHEGYRHIVVIPVFL HHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEHHH TIGTHMFDDIPTIIGMKDNPASIQHLKLEGIARYKPKAKTHLAPSLDFSGLLKSNALRRT HHHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHCCCCCHHCCCCCCCHHHHHHHHHHHHH TALSNNPENEGLVLVGYGSTHFDNQWSELFDEVGSYVCRKTGITEYTTAWCGHIAHYSSD HHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC STTVAVNRILDTKERAIVIPLLVSQSEQFQIKIIGNGVSAVEGYSERVGYKPDAILPDPK CCEEEHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCHHHHCCHHHHCCCCCCCCCCCCC LEEWVIETARNYAQSTAE HHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA