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The map label for this gene is psd

Identifier: 194333383

GI number: 194333383

Start: 583266

End: 583919

Strand: Reverse

Name: psd

Synonym: Paes_0540

Alternate gene names: 194333383

Gene position: 583919-583266 (Counterclockwise)

Preceding gene: 194333385

Following gene: 194333382

Centisome position: 23.24

GC content: 50.31

Gene sequence:

>654_bases
ATGTTTGCACGATACGGCCGGACAACCCTGACAAAAACACTTCTTCTCTGCCTGGCAGCCTTTTTCTGCGCGCTCCTGCT
GCCAACACTCGTCCAGATCCCCGTCATGACCCTTTCGCTCCTGATGGTGCTCTTCAGCCTCTATTTCTTCAGAGACCCGT
CAAGAACTCCTGTCGGCAACGCATCGGCAATAGTGGCTCCTGCAGACGGAAAAGTGCTCCTTATCAGAAAAACGGACCAC
CCGTTTACCGGAAAAAATTCCACCCTGGTCAGCATCTTCATGTCCCCGTTCAATGTCCATGTCAACAGAATCCCCATCAA
CGGAAGGGTAACCCATCTGGAGTATCATCCAGGCAAATTCCTCATGGCATTTGATCACAACAGCATGAGCGATAACGAAC
GCATGGATATCGGCATTGAAAACACTCAATCCAAAGTATTCTTCTCCCAGGTATCTGGGTTTCTTGCCCGAAGGATCGTC
TGTCATCTGACCAACGACCAGAACGTCAGGGCAGGTGAAAAGTTCGGCATGATCAAATTCGGCTCCCGACTCGACATCAT
CCTCCCCTCTCAGGCAGAAATTGCGCTTGAAGAAGGAAAAAAAACTCGCGCAGGAGAAACCGTTGTTGCCCGGCTTCCCA
ATATAACTACATAG

Upstream 100 bases:

>100_bases
TACGAAGATCCAAGGTGACAGCGTTGCGATATTCTCAATAAAATGTATTTTTCGTTTCCTTAATGCAGTATTCAATAAAT
AAACGCGAGTGTCACTGTTC

Downstream 100 bases:

>100_bases
CGATATAGCAGACAAAGAGACAAAAGCGTTTGTTTAATGGCTTGGTAATGATTATATAAATAGTCGTTATAGACAGAAGT
ATCTTCAAGAGATTTAATAT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MFARYGRTTLTKTLLLCLAAFFCALLLPTLVQIPVMTLSLLMVLFSLYFFRDPSRTPVGNASAIVAPADGKVLLIRKTDH
PFTGKNSTLVSIFMSPFNVHVNRIPINGRVTHLEYHPGKFLMAFDHNSMSDNERMDIGIENTQSKVFFSQVSGFLARRIV
CHLTNDQNVRAGEKFGMIKFGSRLDIILPSQAEIALEEGKKTRAGETVVARLPNITT

Sequences:

>Translated_217_residues
MFARYGRTTLTKTLLLCLAAFFCALLLPTLVQIPVMTLSLLMVLFSLYFFRDPSRTPVGNASAIVAPADGKVLLIRKTDH
PFTGKNSTLVSIFMSPFNVHVNRIPINGRVTHLEYHPGKFLMAFDHNSMSDNERMDIGIENTQSKVFFSQVSGFLARRIV
CHLTNDQNVRAGEKFGMIKFGSRLDIILPSQAEIALEEGKKTRAGETVVARLPNITT
>Mature_217_residues
MFARYGRTTLTKTLLLCLAAFFCALLLPTLVQIPVMTLSLLMVLFSLYFFRDPSRTPVGNASAIVAPADGKVLLIRKTDH
PFTGKNSTLVSIFMSPFNVHVNRIPINGRVTHLEYHPGKFLMAFDHNSMSDNERMDIGIENTQSKVFFSQVSGFLARRIV
CHLTNDQNVRAGEKFGMIKFGSRLDIILPSQAEIALEEGKKTRAGETVVARLPNITT

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_PROA2 (B4S5J9)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002015243.1
- GeneID:   6458491
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_0540
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24176; Mature: 24176

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFARYGRTTLTKTLLLCLAAFFCALLLPTLVQIPVMTLSLLMVLFSLYFFRDPSRTPVGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ASAIVAPADGKVLLIRKTDHPFTGKNSTLVSIFMSPFNVHVNRIPINGRVTHLEYHPGKF
CCEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEECCCEEEEEEECCCEE
LMAFDHNSMSDNERMDIGIENTQSKVFFSQVSGFLARRIVCHLTNDQNVRAGEKFGMIKF
EEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEE
GSRLDIILPSQAEIALEEGKKTRAGETVVARLPNITT
CCEEEEEECCCCHHHHHCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MFARYGRTTLTKTLLLCLAAFFCALLLPTLVQIPVMTLSLLMVLFSLYFFRDPSRTPVGN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
ASAIVAPADGKVLLIRKTDHPFTGKNSTLVSIFMSPFNVHVNRIPINGRVTHLEYHPGKF
CCEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEEEECCCEEEEEEECCCEE
LMAFDHNSMSDNERMDIGIENTQSKVFFSQVSGFLARRIVCHLTNDQNVRAGEKFGMIKF
EEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCEEEE
GSRLDIILPSQAEIALEEGKKTRAGETVVARLPNITT
CCEEEEEECCCCHHHHHCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA