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The map label for this gene is rutD [H]

Identifier: 194333161

GI number: 194333161

Start: 343309

End: 344235

Strand: Reverse

Name: rutD [H]

Synonym: Paes_0317

Alternate gene names: 194333161

Gene position: 344235-343309 (Counterclockwise)

Preceding gene: 194333173

Following gene: 194333160

Centisome position: 13.7

GC content: 51.56

Gene sequence:

>927_bases
ATGAGCTATTTCCAGAACAATCGCTATACACTCTACTACTCCGACACCGCTGAAACCAACCCGTCAGTAAAGGATAAGCC
CGTTGTCCTCTTCGTCAACGGCTGGGCTATCTCCTCCCGATACTGGGAGCCGCTCATAGAACAGCTCACACCCGAATACC
GCTGCATCACCTATGATCAGAGCGGAACGGGGAAAACCGTTATCGGAGAATATCACCGGCCATCTTTGACTATTCAGGGC
TTTGCGGACGAAGCCTCGGCGCTGATTGAGCATCTCGGGCTCGACAAGGAAAGAAAGCTTCATATTGTCGGTCATTCGAT
GGGAGGAATGGTGGCAACAGAGCTCTGCCTTCGCTACCAGGACGTCCTTCTTTCTGCAACCATTCTGGCGTGCGGCATAT
TCGAGGAAACCGCCTTCACCTCGGCAGGTCTGATGTTTCTGGGCGGGCTGATTGACGTCTCATTGAACTTCCGGCAGATC
TTCCAGATCGAGCCACTCAAAAGTATGTTCATCAAAAGAGCAGCCTCCCGGGATATCGGCAAAACCTACAGCGATATCAT
CATAGAGGATTTCACGACATCGGATAAAGACGCGACCATCGCTGTCGGGCACTTTTCGATCGACCGCGAGGTACTCCGGG
CCTATACCCGCCACGTGCTGGCAATCGCGTCGCCGGTCCTGTGCTGCGTAGGCATGGAAGATCACACCATTCCGCCTGAA
GGAACCATCACCCTCTATGAAAAACGCAGTAAAGAATCACCTGCTCCATCCAGACTGGTCCAGTTCATGAAACTGGGGCA
TCTGCCCATGCTGGAAGACACGCAGGGTTTTGCGCTGCAACTGAAAAAACATTTTGCATTCGGGGAACAATTTTATAAAA
CTCCTCATCAGAAAATTCGGCATGATGAAGTCACCAAAATCTCATGA

Upstream 100 bases:

>100_bases
TGTAAACTCATAAAGCCTTGCTCATAGCAGGTAACCCGTAATTGCTTATATTAGGCATGCCGTACTTTCAAACAATGATT
CCCGTAGACGACCGTCTTAG

Downstream 100 bases:

>100_bases
CTGACAGACCGAAGGAACACCCGGGCACAGACGAAAACGATTGCATTACTTTGTAACTCATACTACGACCTATTGTGACG
ACGAAAAAGAAACATCAACC

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSYFQNNRYTLYYSDTAETNPSVKDKPVVLFVNGWAISSRYWEPLIEQLTPEYRCITYDQSGTGKTVIGEYHRPSLTIQG
FADEASALIEHLGLDKERKLHIVGHSMGGMVATELCLRYQDVLLSATILACGIFEETAFTSAGLMFLGGLIDVSLNFRQI
FQIEPLKSMFIKRAASRDIGKTYSDIIIEDFTTSDKDATIAVGHFSIDREVLRAYTRHVLAIASPVLCCVGMEDHTIPPE
GTITLYEKRSKESPAPSRLVQFMKLGHLPMLEDTQGFALQLKKHFAFGEQFYKTPHQKIRHDEVTKIS

Sequences:

>Translated_308_residues
MSYFQNNRYTLYYSDTAETNPSVKDKPVVLFVNGWAISSRYWEPLIEQLTPEYRCITYDQSGTGKTVIGEYHRPSLTIQG
FADEASALIEHLGLDKERKLHIVGHSMGGMVATELCLRYQDVLLSATILACGIFEETAFTSAGLMFLGGLIDVSLNFRQI
FQIEPLKSMFIKRAASRDIGKTYSDIIIEDFTTSDKDATIAVGHFSIDREVLRAYTRHVLAIASPVLCCVGMEDHTIPPE
GTITLYEKRSKESPAPSRLVQFMKLGHLPMLEDTQGFALQLKKHFAFGEQFYKTPHQKIRHDEVTKIS
>Mature_307_residues
SYFQNNRYTLYYSDTAETNPSVKDKPVVLFVNGWAISSRYWEPLIEQLTPEYRCITYDQSGTGKTVIGEYHRPSLTIQGF
ADEASALIEHLGLDKERKLHIVGHSMGGMVATELCLRYQDVLLSATILACGIFEETAFTSAGLMFLGGLIDVSLNFRQIF
QIEPLKSMFIKRAASRDIGKTYSDIIIEDFTTSDKDATIAVGHFSIDREVLRAYTRHVLAIASPVLCCVGMEDHTIPPEG
TITLYEKRSKESPAPSRLVQFMKLGHLPMLEDTQGFALQLKKHFAFGEQFYKTPHQKIRHDEVTKIS

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 34773; Mature: 34642

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFQNNRYTLYYSDTAETNPSVKDKPVVLFVNGWAISSRYWEPLIEQLTPEYRCITYDQ
CCCEECCEEEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHCCCCEEEEEECC
SGTGKTVIGEYHRPSLTIQGFADEASALIEHLGLDKERKLHIVGHSMGGMVATELCLRYQ
CCCCCEEEECCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH
DVLLSATILACGIFEETAFTSAGLMFLGGLIDVSLNFRQIFQIEPLKSMFIKRAASRDIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHEEECHHHHHHHHHHHHHHHC
KTYSDIIIEDFTTSDKDATIAVGHFSIDREVLRAYTRHVLAIASPVLCCVGMEDHTIPPE
CHHHHHEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
GTITLYEKRSKESPAPSRLVQFMKLGHLPMLEDTQGFALQLKKHFAFGEQFYKTPHQKIR
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHC
HDEVTKIS
CCCCCCCC
>Mature Secondary Structure 
SYFQNNRYTLYYSDTAETNPSVKDKPVVLFVNGWAISSRYWEPLIEQLTPEYRCITYDQ
CCEECCEEEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHCCCCEEEEEECC
SGTGKTVIGEYHRPSLTIQGFADEASALIEHLGLDKERKLHIVGHSMGGMVATELCLRYQ
CCCCCEEEECCCCCCEEEECCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHH
DVLLSATILACGIFEETAFTSAGLMFLGGLIDVSLNFRQIFQIEPLKSMFIKRAASRDIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHEEECHHHHHHHHHHHHHHHC
KTYSDIIIEDFTTSDKDATIAVGHFSIDREVLRAYTRHVLAIASPVLCCVGMEDHTIPPE
CHHHHHEEECCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCC
GTITLYEKRSKESPAPSRLVQFMKLGHLPMLEDTQGFALQLKKHFAFGEQFYKTPHQKIR
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHC
HDEVTKIS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA