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The map label for this gene is 194332923

Identifier: 194332923

GI number: 194332923

Start: 79824

End: 80033

Strand: Reverse

Name: 194332923

Synonym: Paes_0075

Alternate gene names: NA

Gene position: 80033-79824 (Counterclockwise)

Preceding gene: 194332924

Following gene: 194332922

Centisome position: 3.18

GC content: 43.33

Gene sequence:

>210_bases
ATGACCAAGTCTTTCGAAATATCCAAGAAACTTGTATGGGAGGCCTATAAATGTTTTAAGGCAAATGAAGGTGCTGCCGG
GGTAGATCATGAGACGATAAAACAATTCGATCGTCATCTGAAAGACAATCTGTACAAGATCTGGAATCGCATGTCCTCCG
GCAGCTATTTTCCGCCACCGGTGAAAGGTGTGCCGATACCAAAGAAATAA

Upstream 100 bases:

>100_bases
GTAGTAGTGAAAAAGCTGCTGTAATGGTGGTGGAGCAAAGGGACGGTATCATTCAGGTCATATCAGAAGTCAACCGTGAA
TGCGGGAGGAGCTGTTGATC

Downstream 100 bases:

>100_bases
GGTGGCGAAAGAATGTTGGGGATTCCTACGGTATAGGATCGAATTGCCCAGACGGTGTGGTCAAGCTAAAGCTTGAGCTG
CTCCTTGAATCGCTGTTTCA

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Reverse Transcriptase; Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Protein; Retron-Type Reverse Transcriptase; Reverse Transcriptase Fragment; Reverse Transcriptase/Retron Type

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MTKSFEISKKLVWEAYKCFKANEGAAGVDHETIKQFDRHLKDNLYKIWNRMSSGSYFPPPVKGVPIPKK

Sequences:

>Translated_69_residues
MTKSFEISKKLVWEAYKCFKANEGAAGVDHETIKQFDRHLKDNLYKIWNRMSSGSYFPPPVKGVPIPKK
>Mature_68_residues
TKSFEISKKLVWEAYKCFKANEGAAGVDHETIKQFDRHLKDNLYKIWNRMSSGSYFPPPVKGVPIPKK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7987; Mature: 7856

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSFEISKKLVWEAYKCFKANEGAAGVDHETIKQFDRHLKDNLYKIWNRMSSGSYFPPP
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VKGVPIPKK
CCCCCCCCC
>Mature Secondary Structure 
TKSFEISKKLVWEAYKCFKANEGAAGVDHETIKQFDRHLKDNLYKIWNRMSSGSYFPPP
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
VKGVPIPKK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA