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The map label for this gene is ydeM [C]

Identifier: 193213491

GI number: 193213491

Start: 2034923

End: 2036200

Strand: Direct

Name: ydeM [C]

Synonym: Cpar_1852

Alternate gene names: 193213491

Gene position: 2034923-2036200 (Clockwise)

Preceding gene: 193213488

Following gene: 193213492

Centisome position: 88.89

GC content: 56.42

Gene sequence:

>1278_bases
ATGCCCGCATACTCCATTGAACAGAAGGGTGATATAACCTTCCTTCAGCCGTCATCAGGCAAATTCTTCGTCGCGCTCGA
CAACCGCTGCGGCCGATGGCAGATGTTCGACGGCAATGCGTCCGAAGCACAAAAAGCTGAAATCGCGGCCAGCCTGAAAG
AGTCGCCAACCCCCGATTTGATGGAGCCAGACGATGACTATCTGGAGGTGGTCATTTTCATCACCGACCGCTGTAACCTT
GGCTGCGTCTATTGCAAATACGCCGATCTGACACAGCTTTCGGAGGTGCGGGGAACGGATGTCGAGCAAATCTGCCGGAC
GCTCGAAAAGCTGATCCGGGGAAAAAAACAGGTGCGAATCACCTTTCAGGGTGGCGAACCCCTGCTCATGCACCGCGAGA
TCGACCAGATCTGCGCCTTCCTGACCGGCAACTTTTCGGAAATCGAGTTTTCGTTCGCCCTCCAGTCCAACGGCACCCTG
CTGAATGACGCCATTCTGGAGATGCTGAAACAATACGAGATTACCGTCGGCATCACCATCGACGGCCCGGCAAGCCAGCA
CGACCTGTCGCGCCCGTTCAAAAACGGCGAAGGGAGCTTCGCGACGATCACAAGCAATCTCGAACGGCTACAAAAAAACA
ATGTGCGTTGCGGCGTGCTCTCGGTTATCCGCGATCCGGACGAACTGGAGGCACTGTTCCGCTTCAACCGAGAGGAACTC
GGGCTGAACTCCTTCTACCTCAAGCCGCTGGAGTTCGCCGATTCGGGTGCGGAAAGCAGCGAAGAATTCTCCGCCTACTA
CGGCAAGCTGGCCGACCGTCAACTCGAATTGATACAGGAACTGATCCGCATTCACACAACGTCGGGAGAACGGATTCACG
AACAGATGCTTAAAACCGTGCTCGGCAAGATGTTCAGGCCTTCGTTCTACAACGACGGCTGCATCAGAACCCCTTCATGC
GGCAGCAACGAGCGCTACAAGAGCATGAATTGCGACGGCTCAGTGCAGTGGTGCGCCCATCTTAAAAATCAGCAGGACGA
AGCAGTCAAGCAACGCTCGAAGGAGCGCTACGGCTTTTGCGCCGACTGCCCGATCAGCTCGATCTGCCTCTCGTTCTGCC
CCGCCGTCATCCCCGGCTACCGCCACGGCGACCCCGAAGCCTGCTACCTGCCGCTCGCGAAACGATTCTGCACATACCGC
CGCCAGATGATGATGAGCCTGTTCGAGCTGATGCACGAAAACATGCAGGCCGTCACCGCCTGTTTCATGCAGAAATGA

Upstream 100 bases:

>100_bases
TTCTTGCCGCAGGCAACGCTTGGTCATGATAACGGCACTTCAGCCATCACCCCTTTCCCGATCCACCACCCAGACAACAG
CAAAAGGAGCGGACTCCGAA

Downstream 100 bases:

>100_bases
ATCCGCAATGAGCAGCGCGCTTGAACAGATGCGAGTCGCCTTGCGCTCAACCGGGATGGAGGTTTGCGAAAAAACCCGTC
AGGGCAGCGAACTGCCGTTT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MPAYSIEQKGDITFLQPSSGKFFVALDNRCGRWQMFDGNASEAQKAEIAASLKESPTPDLMEPDDDYLEVVIFITDRCNL
GCVYCKYADLTQLSEVRGTDVEQICRTLEKLIRGKKQVRITFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTL
LNDAILEMLKQYEITVGITIDGPASQHDLSRPFKNGEGSFATITSNLERLQKNNVRCGVLSVIRDPDELEALFRFNREEL
GLNSFYLKPLEFADSGAESSEEFSAYYGKLADRQLELIQELIRIHTTSGERIHEQMLKTVLGKMFRPSFYNDGCIRTPSC
GSNERYKSMNCDGSVQWCAHLKNQQDEAVKQRSKERYGFCADCPISSICLSFCPAVIPGYRHGDPEACYLPLAKRFCTYR
RQMMMSLFELMHENMQAVTACFMQK

Sequences:

>Translated_425_residues
MPAYSIEQKGDITFLQPSSGKFFVALDNRCGRWQMFDGNASEAQKAEIAASLKESPTPDLMEPDDDYLEVVIFITDRCNL
GCVYCKYADLTQLSEVRGTDVEQICRTLEKLIRGKKQVRITFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTL
LNDAILEMLKQYEITVGITIDGPASQHDLSRPFKNGEGSFATITSNLERLQKNNVRCGVLSVIRDPDELEALFRFNREEL
GLNSFYLKPLEFADSGAESSEEFSAYYGKLADRQLELIQELIRIHTTSGERIHEQMLKTVLGKMFRPSFYNDGCIRTPSC
GSNERYKSMNCDGSVQWCAHLKNQQDEAVKQRSKERYGFCADCPISSICLSFCPAVIPGYRHGDPEACYLPLAKRFCTYR
RQMMMSLFELMHENMQAVTACFMQK
>Mature_424_residues
PAYSIEQKGDITFLQPSSGKFFVALDNRCGRWQMFDGNASEAQKAEIAASLKESPTPDLMEPDDDYLEVVIFITDRCNLG
CVYCKYADLTQLSEVRGTDVEQICRTLEKLIRGKKQVRITFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTLL
NDAILEMLKQYEITVGITIDGPASQHDLSRPFKNGEGSFATITSNLERLQKNNVRCGVLSVIRDPDELEALFRFNREELG
LNSFYLKPLEFADSGAESSEEFSAYYGKLADRQLELIQELIRIHTTSGERIHEQMLKTVLGKMFRPSFYNDGCIRTPSCG
SNERYKSMNCDGSVQWCAHLKNQQDEAVKQRSKERYGFCADCPISSICLSFCPAVIPGYRHGDPEACYLPLAKRFCTYRR
QMMMSLFELMHENMQAVTACFMQK

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=334, Percent_Identity=25.748502994012, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI48994973, Length=155, Percent_Identity=30.9677419354839, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 48268; Mature: 48136

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAYSIEQKGDITFLQPSSGKFFVALDNRCGRWQMFDGNASEAQKAEIAASLKESPTPDL
CCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC
MEPDDDYLEVVIFITDRCNLGCVYCKYADLTQLSEVRGTDVEQICRTLEKLIRGKKQVRI
CCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
TFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTLLNDAILEMLKQYEITVGITI
EEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCEEEEEEEE
DGPASQHDLSRPFKNGEGSFATITSNLERLQKNNVRCGVLSVIRDPDELEALFRFNREEL
CCCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCCHHHC
GLNSFYLKPLEFADSGAESSEEFSAYYGKLADRQLELIQELIRIHTTSGERIHEQMLKTV
CCCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGKMFRPSFYNDGCIRTPSCGSNERYKSMNCDGSVQWCAHLKNQQDEAVKQRSKERYGFC
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC
ADCPISSICLSFCPAVIPGYRHGDPEACYLPLAKRFCTYRRQMMMSLFELMHENMQAVTA
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CFMQK
HHHCC
>Mature Secondary Structure 
PAYSIEQKGDITFLQPSSGKFFVALDNRCGRWQMFDGNASEAQKAEIAASLKESPTPDL
CCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCC
MEPDDDYLEVVIFITDRCNLGCVYCKYADLTQLSEVRGTDVEQICRTLEKLIRGKKQVRI
CCCCCCCEEEEEEEECCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEE
TFQGGEPLLMHREIDQICAFLTGNFSEIEFSFALQSNGTLLNDAILEMLKQYEITVGITI
EEECCCCEEEHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCEEEEEEEE
DGPASQHDLSRPFKNGEGSFATITSNLERLQKNNVRCGVLSVIRDPDELEALFRFNREEL
CCCCCHHHHHCCCCCCCCCEEHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCCHHHC
GLNSFYLKPLEFADSGAESSEEFSAYYGKLADRQLELIQELIRIHTTSGERIHEQMLKTV
CCCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LGKMFRPSFYNDGCIRTPSCGSNERYKSMNCDGSVQWCAHLKNQQDEAVKQRSKERYGFC
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC
ADCPISSICLSFCPAVIPGYRHGDPEACYLPLAKRFCTYRRQMMMSLFELMHENMQAVTA
CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CFMQK
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]