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The map label for this gene is fni

Identifier: 193213416

GI number: 193213416

Start: 1950910

End: 1951983

Strand: Direct

Name: fni

Synonym: Cpar_1777

Alternate gene names: 193213416

Gene position: 1950910-1951983 (Clockwise)

Preceding gene: 193213414

Following gene: 193213417

Centisome position: 85.22

GC content: 63.13

Gene sequence:

>1074_bases
ATGCAAGAGACAAGCGCAACCATAACCGCCGAACGCAAGCACAGCCACGTCGATGTCTGCCTCAACCGGCCAGTCTGTTT
CGACGGGCAGGATACCGGTCTGGATGCCTGGCGATTTGAGCACAACGCCGCGCCGGAGATCGATTTCGCGGAGATCGACC
TGACCGCCGAATTCCTTGGCCACGCCATCGGTATGCCGCTCATGATCTCTTCGATGACCGGCGGTTACGGCGACGCGCTT
GCGCTGAACCGTACACTGGCCGAAGCCGCCGAACGCTTCCGCATCCCGCTCGGTGTCGGCAGCATGCGCCAGGCGCTTGA
AGGCAACTCGCACCGCGAAAGCTTTTCGATCGTGCGCTCGTCGGCCCCGTCAGTACCGATCTTCGCCAACATCGGCGCGC
CGGAAGTGGCCGCCGGCCTGAGCCGGGAGCAGCTCTCCACGCTCGTCGAGCTGATCGAGGCTGACGGCCTGATCGTGCAT
CTCAATCCGGCGCAAGAGCTATTCCAGCCGGAAGGCAGCACCAATTTCAGAGGATTTCTCGACCGCTTGCACGACATCAC
CGCAACCATCAACGTTCCGGTGATCGCCAAGGAGGTGGGCTGCGGCATCTCGGCACCATTGGCCAGTAAGCTCGCCGACG
CGGGCGTCAAGGCCATCGACGTGGCTGGCGCTGGAGGCATCAGCTGGCAGAAGGTCGAAGAGTGCCGCTACCTCGACCGC
TTTGGCAATGAAGAGCGCTTCAGCCCTTCGGCGCTCGACGAGTTCCTCAACTGGGGCATCCCGACCGCCGAGTGCCTGAC
CGGCATAGCCGCGCTGAAGGAGAAGAGTCCGGAGTACGGCTCGCTCGCCGTCATCTCGTCGGGCGGCATCCGCAATGGAC
TCGATGTCGCCAAATCGATCGCGCTCGGCGCGGACATCGCAGCATCCGCTCAGCACCTGCTCAAGGCCCTGCGTGCCGGA
ACGCTCGAAGAGACGATCCGCACCTGGGCAAACGATCTCCGGGCAGCCATGTTCCTGACCGGTTCGGCCACCACGGCACA
GCTTAAACACGCACCAATCTACCGTAAACCCTGA

Upstream 100 bases:

>100_bases
CGTACAAGCCCGAAAAAAGTTATGGGATATTTGCCATAAGTTATACTTTAAAGAACATCTCTGAAAATCGTTCAAACCCG
GAGAGCATCGCCATCCGACC

Downstream 100 bases:

>100_bases
CTACAGGAGACTACAGGAGTTATGTCTTCACCAATCACCCAAGCACAGGTTGAAACCAGATACCAGCAATACCACGCCAA
AATCAACGAGGCCCTTGCTG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MQETSATITAERKHSHVDVCLNRPVCFDGQDTGLDAWRFEHNAAPEIDFAEIDLTAEFLGHAIGMPLMISSMTGGYGDAL
ALNRTLAEAAERFRIPLGVGSMRQALEGNSHRESFSIVRSSAPSVPIFANIGAPEVAAGLSREQLSTLVELIEADGLIVH
LNPAQELFQPEGSTNFRGFLDRLHDITATINVPVIAKEVGCGISAPLASKLADAGVKAIDVAGAGGISWQKVEECRYLDR
FGNEERFSPSALDEFLNWGIPTAECLTGIAALKEKSPEYGSLAVISSGGIRNGLDVAKSIALGADIAASAQHLLKALRAG
TLEETIRTWANDLRAAMFLTGSATTAQLKHAPIYRKP

Sequences:

>Translated_357_residues
MQETSATITAERKHSHVDVCLNRPVCFDGQDTGLDAWRFEHNAAPEIDFAEIDLTAEFLGHAIGMPLMISSMTGGYGDAL
ALNRTLAEAAERFRIPLGVGSMRQALEGNSHRESFSIVRSSAPSVPIFANIGAPEVAAGLSREQLSTLVELIEADGLIVH
LNPAQELFQPEGSTNFRGFLDRLHDITATINVPVIAKEVGCGISAPLASKLADAGVKAIDVAGAGGISWQKVEECRYLDR
FGNEERFSPSALDEFLNWGIPTAECLTGIAALKEKSPEYGSLAVISSGGIRNGLDVAKSIALGADIAASAQHLLKALRAG
TLEETIRTWANDLRAAMFLTGSATTAQLKHAPIYRKP
>Mature_357_residues
MQETSATITAERKHSHVDVCLNRPVCFDGQDTGLDAWRFEHNAAPEIDFAEIDLTAEFLGHAIGMPLMISSMTGGYGDAL
ALNRTLAEAAERFRIPLGVGSMRQALEGNSHRESFSIVRSSAPSVPIFANIGAPEVAAGLSREQLSTLVELIEADGLIVH
LNPAQELFQPEGSTNFRGFLDRLHDITATINVPVIAKEVGCGISAPLASKLADAGVKAIDVAGAGGISWQKVEECRYLDR
FGNEERFSPSALDEFLNWGIPTAECLTGIAALKEKSPEYGSLAVISSGGIRNGLDVAKSIALGADIAASAQHLLKALRAG
TLEETIRTWANDLRAAMFLTGSATTAQLKHAPIYRKP

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_CHLP8 (B3QQG6)

Other databases:

- EMBL:   CP001099
- RefSeq:   YP_001999369.1
- GeneID:   6420722
- GenomeReviews:   CP001099_GR
- KEGG:   cpc:Cpar_1777
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 38091; Mature: 38091

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQETSATITAERKHSHVDVCLNRPVCFDGQDTGLDAWRFEHNAAPEIDFAEIDLTAEFLG
CCCCCCEEEECCCCCCEEEEECCCEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
HAIGMPLMISSMTGGYGDALALNRTLAEAAERFRIPLGVGSMRQALEGNSHRESFSIVRS
HHHCCHHEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHC
SAPSVPIFANIGAPEVAAGLSREQLSTLVELIEADGLIVHLNPAQELFQPEGSTNFRGFL
CCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCHHHHHH
DRLHDITATINVPVIAKEVGCGISAPLASKLADAGVKAIDVAGAGGISWQKVEECRYLDR
HHHHHHHEEECCCEEEHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
FGNEERFSPSALDEFLNWGIPTAECLTGIAALKEKSPEYGSLAVISSGGIRNGLDVAKSI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
ALGADIAASAQHLLKALRAGTLEETIRTWANDLRAAMFLTGSATTAQLKHAPIYRKP
HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MQETSATITAERKHSHVDVCLNRPVCFDGQDTGLDAWRFEHNAAPEIDFAEIDLTAEFLG
CCCCCCEEEECCCCCCEEEEECCCEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHH
HAIGMPLMISSMTGGYGDALALNRTLAEAAERFRIPLGVGSMRQALEGNSHRESFSIVRS
HHHCCHHEEHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHC
SAPSVPIFANIGAPEVAAGLSREQLSTLVELIEADGLIVHLNPAQELFQPEGSTNFRGFL
CCCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCHHHHHH
DRLHDITATINVPVIAKEVGCGISAPLASKLADAGVKAIDVAGAGGISWQKVEECRYLDR
HHHHHHHEEECCCEEEHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
FGNEERFSPSALDEFLNWGIPTAECLTGIAALKEKSPEYGSLAVISSGGIRNGLDVAKSI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHH
ALGADIAASAQHLLKALRAGTLEETIRTWANDLRAAMFLTGSATTAQLKHAPIYRKP
HHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA