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The map label for this gene is ygcF [C]

Identifier: 193213357

GI number: 193213357

Start: 1880173

End: 1880832

Strand: Direct

Name: ygcF [C]

Synonym: Cpar_1718

Alternate gene names: 193213357

Gene position: 1880173-1880832 (Clockwise)

Preceding gene: 193213356

Following gene: 193213358

Centisome position: 82.13

GC content: 61.52

Gene sequence:

>660_bases
ATGACAACGGCGACCATCAGCATCAGCGAAATCTTCCACTCCATTCAGGGCGAATCATCGTTCGCGGGATGGCCGTGCGC
CTTCGTGCGCCTCGCCGGATGCGGCCACGGCTGCAACTACTGCGACACGACCTATGCCGAGGAAGCGGGCACGGCGATGA
CGATTGACGAAGTCGTCCGTCGCGCACTAACGTTCGATGCGCCAATCGTTGAAGTCACCGGCGGCGAGCCGCTGCTTCAG
CCGGAGGTCTATCCGCTGCTCTCCGCACTCTGCGACAAAGGCGCGAAGGTGCTGCTCGAAACCGGCGGCTTCCTGCCGGT
GAACCGCGTCGATCCGCGCGTGCATACGATCATCGATATCAAAACTCCGTCATCGGGAGTCGCCGAGCAGAACTGCATGG
ATAACATCCCGCTGGCACTCGCATCACCCAAACGCTTCGAGTTCAAGATCGTCGTAGCCTCGGAGGAAGACTACCTGTGG
GCGCGCGATTTCATCACGAAACAAGGCCTGCTCGGCAAGTGCACGCTCATCTTCGGCACGGTGTTCGGCCAGCTCGAACC
GCGCCTGCTGGCGGAGTGGATTCTGCGCGACCGGCTGCCGGTTCGGATGCAGCTTCAGCTGCACAAGTACATCTGGAACC
CCGAAACGCGGGGGGTGTAG

Upstream 100 bases:

>100_bases
TGCCGGAGGACACGCCCGAATCGCTTGCCGAACGGGTGCTCCGCTGCGAACACCGCCTTTACCCCGATGCGCTCGAACAA
CTGCTTGACGAGCAGATGCC

Downstream 100 bases:

>100_bases
ATGACGAGCCTCTCCGTCATCGTGCCGCTCTATAACGAGCGGGAGTCGCTCCCCGAGCTGTGCGCCCAACTGTTCGCAGC
GCTGAACAGTCCCGATCTGG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Radical Activating; Radical SAM Family Protein; Organic Radical Activating; Organic Radical Activating Protein; 7-Cyano-7-Deazaguanosine Biosynthesis Protein QueE; Radical Sam Domain Protein; NrdG Protein; Radical SAM-Superfamily Protein; Radical Activating ; Radical SAM Superfamily Protein; Radical SAM Protein; MoaA Family Fe-S Oxidoreductase; Organic-Radical-Activating Protein; Co PQQ Synthesis Protein; Co PQQ Synthesis Protein III; 6- Pyruvoyltetrahydropterin 2-Reductase; Queuosine Biosynthesis Protein QueE; Radical Activating Family Protein; Organic Radical Activating Protein; Anaerobic Ribonucleotide Reductase Activating Protein NrdG; Fe-S Oxidoreductase; Queuosine Biosynthesis Protein; Co PQQ Synthesis Protein Conjectural; Radical-Activating Radical SAM Superfamily; Organic Radical Activating Protein NrdG; Radical SAM; Radical SAM Family Fe-S Protein

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTTATISISEIFHSIQGESSFAGWPCAFVRLAGCGHGCNYCDTTYAEEAGTAMTIDEVVRRALTFDAPIVEVTGGEPLLQ
PEVYPLLSALCDKGAKVLLETGGFLPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLW
ARDFITKQGLLGKCTLIFGTVFGQLEPRLLAEWILRDRLPVRMQLQLHKYIWNPETRGV

Sequences:

>Translated_219_residues
MTTATISISEIFHSIQGESSFAGWPCAFVRLAGCGHGCNYCDTTYAEEAGTAMTIDEVVRRALTFDAPIVEVTGGEPLLQ
PEVYPLLSALCDKGAKVLLETGGFLPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLW
ARDFITKQGLLGKCTLIFGTVFGQLEPRLLAEWILRDRLPVRMQLQLHKYIWNPETRGV
>Mature_218_residues
TTATISISEIFHSIQGESSFAGWPCAFVRLAGCGHGCNYCDTTYAEEAGTAMTIDEVVRRALTFDAPIVEVTGGEPLLQP
EVYPLLSALCDKGAKVLLETGGFLPVNRVDPRVHTIIDIKTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLWA
RDFITKQGLLGKCTLIFGTVFGQLEPRLLAEWILRDRLPVRMQLQLHKYIWNPETRGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24245; Mature: 24114

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTATISISEIFHSIQGESSFAGWPCAFVRLAGCGHGCNYCDTTYAEEAGTAMTIDEVVR
CCEEEEEHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCCCCCCHHHHCCCEECHHHHHH
RALTFDAPIVEVTGGEPLLQPEVYPLLSALCDKGAKVLLETGGFLPVNRVDPRVHTIIDI
HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEE
KTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLWARDFITKQGLLGKCTLIFGT
ECCCCCCCHHHHHCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
VFGQLEPRLLAEWILRDRLPVRMQLQLHKYIWNPETRGV
HHHCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCC
>Mature Secondary Structure 
TTATISISEIFHSIQGESSFAGWPCAFVRLAGCGHGCNYCDTTYAEEAGTAMTIDEVVR
CEEEEEHHHHHHHHCCCCCCCCCCHHHHEECCCCCCCCCCCCCHHHHCCCEECHHHHHH
RALTFDAPIVEVTGGEPLLQPEVYPLLSALCDKGAKVLLETGGFLPVNRVDPRVHTIIDI
HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEE
KTPSSGVAEQNCMDNIPLALASPKRFEFKIVVASEEDYLWARDFITKQGLLGKCTLIFGT
ECCCCCCCHHHHHCCCCEEEECCCCEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHH
VFGQLEPRLLAEWILRDRLPVRMQLQLHKYIWNPETRGV
HHHCCCHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA