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The map label for this gene is yggS [C]

Identifier: 193213296

GI number: 193213296

Start: 1806977

End: 1807666

Strand: Direct

Name: yggS [C]

Synonym: Cpar_1654

Alternate gene names: 193213296

Gene position: 1806977-1807666 (Clockwise)

Preceding gene: 193213295

Following gene: 193213297

Centisome position: 78.93

GC content: 61.59

Gene sequence:

>690_bases
ATGGAAAGCATCTCCTCGAACCTCGCCGCCGTCAGGGAACAGATCGCCGAGGCCTGCCGCAAAGCGGGCCGAAGTGTGGA
TGAGGTCACTCTCATCGCCGTTTCCAAAACCAAAAGTGCCGCCGCCGTACGCAAAGCATGGGAGGCTGGACAGCGGGAGT
TCGGGGAGAGCTATGTGCAGGAGTTCCTCGAAAAGTGCGAAGCGCCCGAGCTGTCGGGCCTGCCGGTTTCGTGGCACTTC
ATCGGACACCTCCAGTCCAACAAGGTTCGTCAGATCGTCGACAAGGTGACGATGGTGCACGGCATCGACAAGGTTTCGAC
CGCCGAGGAGCTGTCCAAACGCGCGGTTCAGCACGGGCTGAACGTCGATTTCCTGCTTGAAGTGAACGTGTCGCGCGAAG
GCACGAAGTACGGCCTCGGTCCCGACTCGGTGTTGCAGGCCGCCGAAGAGTGCTTCGCTCTGCCGAACGTGCGCCTGCGC
GGACTGATGACCATCGCCTCGCCCGATCCGGACACCGCACGCCGCGAATTCTCGGAGCTGCGCGAAACCCTCGACATGAT
CCGCAACAACGCTCCCGAACCAGCCGCGCTCTCCGAGCTTTCGATGGGCATGAGCGGCGATTTCGAGGAAGCCATCCTCG
AAGGCGCCACCATGATCCGCATCGGAACGGCAATTTTCGGATGGCGATAA

Upstream 100 bases:

>100_bases
TCGATGCGATTGCGGCTGTCGATACCGACATGCGCGACAACCCGATCAAACCGGTCACCATCGAAACTATCACCCCGGTA
ACCGCCTGAACGAACCTGTC

Downstream 100 bases:

>100_bases
ATGGATAATTGAAAGAGCTGGCCTCCTCACTTGCTCTTGTTGCATTTATCCACTGTCAACTGTCAATTATCAACTCCTCC
CCGCCTTTCATCTCTCCCCG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MESISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEFLEKCEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNVDFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLR
GLMTIASPDPDTARREFSELRETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR

Sequences:

>Translated_229_residues
MESISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEFLEKCEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNVDFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLR
GLMTIASPDPDTARREFSELRETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR
>Mature_229_residues
MESISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEFLEKCEAPELSGLPVSWHF
IGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNVDFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLR
GLMTIASPDPDTARREFSELRETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=38.4937238493724, Blast_Score=135, Evalue=2e-32,
Organism=Escherichia coli, GI1789321, Length=230, Percent_Identity=41.304347826087, Blast_Score=166, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=35.6846473029046, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=251, Percent_Identity=33.8645418326693, Blast_Score=108, Evalue=8e-25,
Organism=Drosophila melanogaster, GI45550861, Length=254, Percent_Identity=35.4330708661417, Blast_Score=121, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25135; Mature: 25135

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
EFLEKCEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGL
HHHHHCCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
NVDFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLRGLMTIASPDPDTARREFSEL
CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHH
RETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR
HHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCC
>Mature Secondary Structure
MESISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
EFLEKCEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGL
HHHHHCCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
NVDFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLRGLMTIASPDPDTARREFSEL
CEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHH
RETLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR
HHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHCCCHHEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]