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The map label for this gene is yabD [H]

Identifier: 193213293

GI number: 193213293

Start: 1804870

End: 1805649

Strand: Direct

Name: yabD [H]

Synonym: Cpar_1651

Alternate gene names: 193213293

Gene position: 1804870-1805649 (Clockwise)

Preceding gene: 193213292

Following gene: 193213294

Centisome position: 78.84

GC content: 59.87

Gene sequence:

>780_bases
ATGACGTCGTCCTCCCTGGCCGACATCCACTGCCACCTCTCGTTCCCGGAGTTCGACGAAGACCGCGAGCAGGTGATCGA
GCGGCTCCGGGAGGCGGGCGTCGGACTACTCATCGATCCCGGCACCTGCGCTGAATCGAGCCGTCGTTCGATCGAACTTG
CCGACCGCTACGATTTTATCTACGCCAATGTCGGCCTGCATCCGCATGAGGTAACCGCTCAACTGAGCCCGGATCGTTAT
GATGAGCTTGAAACATTGGCACGATCGGAAAAGGTGGTCGGCATCGGCGAGATCGGGCTCGACTATCACTGGCCAGACCA
CCATCCGGAAGCTCAGCAGGAGGCGTTTCGCGAAATGCTCCGCATGGCTACTCGCCTGGACCTGCCGGTGGTGATCCACT
GCCGCGACGCCTGGCCCGACATGCTGCGCATCCTCGGCGAAGAGCGCTCGTCAGCGCTGAGAGGCGCAATGCACTGCTTT
TCGGGAGACATCGAAATGGCGCAACACTGCATCGAGCTCGGCCTGAAACTCTCGATTCCCGGCATCGTTACCTACAAGAA
ATCGACCCTGCCCGAAGTGGTACAGGCCGTCGGTCTGGATGACCTGCTTTCCGAAACCGACGCCCCCTACCTTGCGCCGG
TTCCCAAACGAGGCAAACGGAACGAACCGGCATTCGTGAAGCACACCGTCAACAAAATCGCCGACCTTCGTCCTGAGCCG
TTCGAAGAGGTCACCGGAGCCCTGTTCAGCAATGCAAAAGAGCTGTTCGCCATTGCGTAA

Upstream 100 bases:

>100_bases
TATCGCTCTGGCCGATCTTCAACATCGCCGATGCGTGCATCACCATCGGCGCGTGCCTGCTGTTTTTCTTTCACGATAAG
ATTTTCAACCCGCGATAACC

Downstream 100 bases:

>100_bases
CTGATGCTATGGCCGGATTTTGAAATTCATGGTAACTTACGTAGGTTGATCGACGCCAGCAGCCGGAAAACGGCTGGGCG
ACCTGCCAGAAAACGAGATC

Product: hydrolase, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MTSSSLADIHCHLSFPEFDEDREQVIERLREAGVGLLIDPGTCAESSRRSIELADRYDFIYANVGLHPHEVTAQLSPDRY
DELETLARSEKVVGIGEIGLDYHWPDHHPEAQQEAFREMLRMATRLDLPVVIHCRDAWPDMLRILGEERSSALRGAMHCF
SGDIEMAQHCIELGLKLSIPGIVTYKKSTLPEVVQAVGLDDLLSETDAPYLAPVPKRGKRNEPAFVKHTVNKIADLRPEP
FEEVTGALFSNAKELFAIA

Sequences:

>Translated_259_residues
MTSSSLADIHCHLSFPEFDEDREQVIERLREAGVGLLIDPGTCAESSRRSIELADRYDFIYANVGLHPHEVTAQLSPDRY
DELETLARSEKVVGIGEIGLDYHWPDHHPEAQQEAFREMLRMATRLDLPVVIHCRDAWPDMLRILGEERSSALRGAMHCF
SGDIEMAQHCIELGLKLSIPGIVTYKKSTLPEVVQAVGLDDLLSETDAPYLAPVPKRGKRNEPAFVKHTVNKIADLRPEP
FEEVTGALFSNAKELFAIA
>Mature_258_residues
TSSSLADIHCHLSFPEFDEDREQVIERLREAGVGLLIDPGTCAESSRRSIELADRYDFIYANVGLHPHEVTAQLSPDRYD
ELETLARSEKVVGIGEIGLDYHWPDHHPEAQQEAFREMLRMATRLDLPVVIHCRDAWPDMLRILGEERSSALRGAMHCFS
GDIEMAQHCIELGLKLSIPGIVTYKKSTLPEVVQAVGLDDLLSETDAPYLAPVPKRGKRNEPAFVKHTVNKIADLRPEPF
EEVTGALFSNAKELFAIA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=294, Percent_Identity=26.8707482993197, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=29.2134831460674, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=28.8389513108614, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI225903424, Length=269, Percent_Identity=27.1375464684015, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=28.6764705882353, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI225903439, Length=244, Percent_Identity=27.0491803278689, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=29.296875, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=28.2608695652174, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=35.408560311284, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=36.8627450980392, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI48994985, Length=259, Percent_Identity=36.2934362934363, Blast_Score=143, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17559024, Length=288, Percent_Identity=27.4305555555556, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=260, Percent_Identity=24.2307692307692, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=220, Percent_Identity=30.4545454545455, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17543026, Length=188, Percent_Identity=29.7872340425532, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24648690, Length=292, Percent_Identity=30.4794520547945, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24586117, Length=283, Percent_Identity=27.9151943462898, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI221330018, Length=283, Percent_Identity=27.9151943462898, Blast_Score=91, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29025; Mature: 28894

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSSLADIHCHLSFPEFDEDREQVIERLREAGVGLLIDPGTCAESSRRSIELADRYDFI
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEHHHCCEEE
YANVGLHPHEVTAQLSPDRYDELETLARSEKVVGIGEIGLDYHWPDHHPEAQQEAFREML
EEECCCCHHHHEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RMATRLDLPVVIHCRDAWPDMLRILGEERSSALRGAMHCFSGDIEMAQHCIELGLKLSIP
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEECCC
GIVTYKKSTLPEVVQAVGLDDLLSETDAPYLAPVPKRGKRNEPAFVKHTVNKIADLRPEP
EEEEECHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
FEEVTGALFSNAKELFAIA
HHHHHHHHHHCHHHHHCCC
>Mature Secondary Structure 
TSSSLADIHCHLSFPEFDEDREQVIERLREAGVGLLIDPGTCAESSRRSIELADRYDFI
CCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCEEHHHCCEEE
YANVGLHPHEVTAQLSPDRYDELETLARSEKVVGIGEIGLDYHWPDHHPEAQQEAFREML
EEECCCCHHHHEECCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
RMATRLDLPVVIHCRDAWPDMLRILGEERSSALRGAMHCFSGDIEMAQHCIELGLKLSIP
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEECCC
GIVTYKKSTLPEVVQAVGLDDLLSETDAPYLAPVPKRGKRNEPAFVKHTVNKIADLRPEP
EEEEECHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
FEEVTGALFSNAKELFAIA
HHHHHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]