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The map label for this gene is omp2b [H]

Identifier: 192288969

GI number: 192288969

Start: 590049

End: 591503

Strand: Reverse

Name: omp2b [H]

Synonym: Rpal_0539

Alternate gene names: 192288969

Gene position: 591503-590049 (Counterclockwise)

Preceding gene: 192288971

Following gene: 192288968

Centisome position: 10.3

GC content: 62.75

Gene sequence:

>1455_bases
ATGAACATCATTAAGCAACTGGCGCTGGGAACAGCTGCGGCGGTGATCGCCGTCGGCAGCGCTCAGGCCGCTGATCTTCC
GTTGAAGGCGAAAGCCGTCGAATACGTGAAGGTCTGCTCGATCTACGGCGCCGGCTTCTACTACATCCCGGGCACCGACA
CCTGCATCAAGCTCGGCGGCTATCTGCGCGCCGACGTCACGATGTTCGGCAGCGGCGGCTATAACGCTCCGGCCTGGAAC
GGCAACGCGGGTCAGAAGAACCGTCTTTCCAACGACTACATCTTCCGGTCTCGTCAGGACATCAACATCGACACCCGCAC
CGCGACCGAATACGGCGTGGTTCGTACCTACTTTGACGCGACGTTCAACTGGACCACCGGCTCTGACACCATCGCCAACG
GTTCGCTCGGCGTGTACTACGCGTTCATCCAGTTCGCCGGCTTCACCTTCGGTAAGGCGGTGTCGCAGTTCGACACTCCC
TGGACCGGCTATCCGGGCAACAACACCTCGTTCCTGATCGGCGGTTACGACGACGTCACCGGCATCAACCAGGTGTCGTA
CACCGCAGAGTTTGGCAACGGCGTGTCGGCGTCGATCTCGCTCGAGGATCAGTCGTCGTACCTGCAGTCGGCGCTGTACA
ACGTTTCGTCCGCCCCGAACTTCCTGGCCTACGGCGCCAACTCCTATGCCGGCACCTCGATCCCCGACATCGTCGGCAAG
ATCCGCGTCGACCAGGCTTGGGGTCTGTTCCAGGTTTCGGCCGCGGCGCATCAGGTTCGCGCCAGCTACTACAACCCGGC
ACTCGAGACCTCCGGCCATCCGAGCGACACCTGGGGCTACGCGGTTCAGGGCGCTCTGTCGCTCAAGAACCTGCCGACCG
GCCCCGGCGACAGCATCAACATCACGGCGACCTACTCGAACGGCGCGACCCGTTACGTGCTGGGCGGCGTGAGCCCGAAC
TCGTTCGCGATCTACGGCAACAACTCGGTTCCGGGCACCTACCAGAGCGTCGCGTTCGGCGTTGCGGCTGACGGCGTTTT
CGCTGGCCTCAACAACCTGACCGGCTCCGGCATCGAGAAGACCAGCGCCTGGGGCGTCCGTGGTGCGTTCAACCACAACT
GGAACCCCTACTGGTCGACCTCGCTGTTCGGTTCGTACACCAAGATCGACTACAACGGCACCGCGACTGCTCTGATCTGC
AACGGTCTCGGCGCTGGGAACGTCGCCGGCTTCAACTGCAATCCGGACTTCGCGATTGCTCAGGTGGGCACCGTCACCCG
TTGGACCCCGGTCAAGAACCTGACCCTGTCGGGCGAAGTGATGTACACCTACCTCGATCAGGCTTCCTCGGGTGTGCTGC
CGCTAACCGCTTCGGCGACCAAGCCGGCCGCGAACTACGAGTTCAAGGACCAGGGCGTCTGGAGCGGCAACCTCCGCGTT
CAGCGCAACTTCTGA

Upstream 100 bases:

>100_bases
TGTCGCGCCGAGGCGCTGGCGAACTTCGCGTCACAGGGCCACCTCGGGGCACCCCCGAAGGAACCGGCTCCATCCACTTT
GTTGACCTTGGAGGGTTGCA

Downstream 100 bases:

>100_bases
TCCCCGCTTTTCGAAGCGAGTATCTGACGAACCCCGGCGGGCAACCGCCGGGGTTTTTCGTTGCGCAGCCAAGATGCAGG
CTTCGAGACGATTACCGTCG

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MNIIKQLALGTAAAVIAVGSAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMFGSGGYNAPAWN
GNAGQKNRLSNDYIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDTIANGSLGVYYAFIQFAGFTFGKAVSQFDTP
WTGYPGNNTSFLIGGYDDVTGINQVSYTAEFGNGVSASISLEDQSSYLQSALYNVSSAPNFLAYGANSYAGTSIPDIVGK
IRVDQAWGLFQVSAAAHQVRASYYNPALETSGHPSDTWGYAVQGALSLKNLPTGPGDSINITATYSNGATRYVLGGVSPN
SFAIYGNNSVPGTYQSVAFGVAADGVFAGLNNLTGSGIEKTSAWGVRGAFNHNWNPYWSTSLFGSYTKIDYNGTATALIC
NGLGAGNVAGFNCNPDFAIAQVGTVTRWTPVKNLTLSGEVMYTYLDQASSGVLPLTASATKPAANYEFKDQGVWSGNLRV
QRNF

Sequences:

>Translated_484_residues
MNIIKQLALGTAAAVIAVGSAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMFGSGGYNAPAWN
GNAGQKNRLSNDYIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDTIANGSLGVYYAFIQFAGFTFGKAVSQFDTP
WTGYPGNNTSFLIGGYDDVTGINQVSYTAEFGNGVSASISLEDQSSYLQSALYNVSSAPNFLAYGANSYAGTSIPDIVGK
IRVDQAWGLFQVSAAAHQVRASYYNPALETSGHPSDTWGYAVQGALSLKNLPTGPGDSINITATYSNGATRYVLGGVSPN
SFAIYGNNSVPGTYQSVAFGVAADGVFAGLNNLTGSGIEKTSAWGVRGAFNHNWNPYWSTSLFGSYTKIDYNGTATALIC
NGLGAGNVAGFNCNPDFAIAQVGTVTRWTPVKNLTLSGEVMYTYLDQASSGVLPLTASATKPAANYEFKDQGVWSGNLRV
QRNF
>Mature_484_residues
MNIIKQLALGTAAAVIAVGSAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGGYLRADVTMFGSGGYNAPAWN
GNAGQKNRLSNDYIFRSRQDINIDTRTATEYGVVRTYFDATFNWTTGSDTIANGSLGVYYAFIQFAGFTFGKAVSQFDTP
WTGYPGNNTSFLIGGYDDVTGINQVSYTAEFGNGVSASISLEDQSSYLQSALYNVSSAPNFLAYGANSYAGTSIPDIVGK
IRVDQAWGLFQVSAAAHQVRASYYNPALETSGHPSDTWGYAVQGALSLKNLPTGPGDSINITATYSNGATRYVLGGVSPN
SFAIYGNNSVPGTYQSVAFGVAADGVFAGLNNLTGSGIEKTSAWGVRGAFNHNWNPYWSTSLFGSYTKIDYNGTATALIC
NGLGAGNVAGFNCNPDFAIAQVGTVTRWTPVKNLTLSGEVMYTYLDQASSGVLPLTASATKPAANYEFKDQGVWSGNLRV
QRNF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 51319; Mature: 51319

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIIKQLALGTAAAVIAVGSAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCEEEECC
YLRADVTMFGSGGYNAPAWNGNAGQKNRLSNDYIFRSRQDINIDTRTATEYGVVRTYFDA
EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE
TFNWTTGSDTIANGSLGVYYAFIQFAGFTFGKAVSQFDTPWTGYPGNNTSFLIGGYDDVT
EEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC
GINQVSYTAEFGNGVSASISLEDQSSYLQSALYNVSSAPNFLAYGANSYAGTSIPDIVGK
CCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHE
IRVDQAWGLFQVSAAAHQVRASYYNPALETSGHPSDTWGYAVQGALSLKNLPTGPGDSIN
EEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEE
ITATYSNGATRYVLGGVSPNSFAIYGNNSVPGTYQSVAFGVAADGVFAGLNNLTGSGIEK
EEEEECCCCEEEEEECCCCCCEEEEECCCCCCCHHHEEEEEECCHHHHHHHCCCCCCCCC
TSAWGVRGAFNHNWNPYWSTSLFGSYTKIDYNGTATALICNGLGAGNVAGFNCNPDFAIA
CCCCCCCCCCCCCCCCEECHHHCCCEEEEEECCCEEEEEEECCCCCCEEEECCCCCEEEE
QVGTVTRWTPVKNLTLSGEVMYTYLDQASSGVLPLTASATKPAANYEFKDQGVWSGNLRV
ECCCEEEECCCCCEEECCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEECCEEE
QRNF
EECC
>Mature Secondary Structure
MNIIKQLALGTAAAVIAVGSAQAADLPLKAKAVEYVKVCSIYGAGFYYIPGTDTCIKLGG
CCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHEEECCCEEEECCCCCEEEECC
YLRADVTMFGSGGYNAPAWNGNAGQKNRLSNDYIFRSRQDINIDTRTATEYGVVRTYFDA
EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEE
TFNWTTGSDTIANGSLGVYYAFIQFAGFTFGKAVSQFDTPWTGYPGNNTSFLIGGYDDVT
EEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCC
GINQVSYTAEFGNGVSASISLEDQSSYLQSALYNVSSAPNFLAYGANSYAGTSIPDIVGK
CCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHE
IRVDQAWGLFQVSAAAHQVRASYYNPALETSGHPSDTWGYAVQGALSLKNLPTGPGDSIN
EEECCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEE
ITATYSNGATRYVLGGVSPNSFAIYGNNSVPGTYQSVAFGVAADGVFAGLNNLTGSGIEK
EEEEECCCCEEEEEECCCCCCEEEEECCCCCCCHHHEEEEEECCHHHHHHHCCCCCCCCC
TSAWGVRGAFNHNWNPYWSTSLFGSYTKIDYNGTATALICNGLGAGNVAGFNCNPDFAIA
CCCCCCCCCCCCCCCCEECHHHCCCEEEEEECCCEEEEEEECCCCCCEEEECCCCCEEEE
QVGTVTRWTPVKNLTLSGEVMYTYLDQASSGVLPLTASATKPAANYEFKDQGVWSGNLRV
ECCCEEEECCCCCEEECCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCEEECCEEE
QRNF
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]