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The map label for this gene is nocM [H]

Identifier: 190895058

GI number: 190895058

Start: 779327

End: 779968

Strand: Reverse

Name: nocM [H]

Synonym: RHECIAT_PC0000724

Alternate gene names: 190895058

Gene position: 779968-779327 (Counterclockwise)

Preceding gene: 190895059

Following gene: 190895057

Centisome position: 71.46

GC content: 58.72

Gene sequence:

>642_bases
ATGTCCATCAAGCTCTTCGAGTTGCTTCTCCAGGCGTCGATCTACACGGTGACGATCAGTGTCGTGTCGATCCTCATCGG
CTTTGCGATTGCGATCCTTCTTTCTGGAATGCTGCTATCGGGGCGTAGCCTTTTCGTGCGATCTGCTCAGATTTTCATCA
GCTTCTTCCGCGGCGTGCCGCTGCTGGTGCAATTGCTGCTGATCTACAATCTGCTTCCGGCCATCGGCATCAACGTGCCG
AGCATCGTTGCCGCGATCATCGGCCTCTCGCTCTGTACGGCAGCCTACCAGGCCGAGAATCTGCGCGGCGGCTTTGCCAG
CGTGCCTCTTGGGCTATTGGAGTCGGCTGAAATGGTCGGTCTGACGCCGCGCCAGGTCTTCCGCCGCATCAAAGTTCCGA
TCGCCCTGCGCCTCACGTTTCCAGCTCTCGTCAATGAGGCGATCCTGATCCTCAAGGCGTCATCATTGGTCTCGGTCGTC
GGCATTGTCGAATTGACGCGCATGGCGCAGGACCTGGCCGGCAGCACCTTCCTGCCCCTACAGATTTTCGCATCTGCAGG
CCTCATCTATCTGATGATCAACTGGCTGGTCGCGCTTGCCGGCGGCATGATCGAAAACAGGTTGCCCGGGGTGCCGCGAT
GA

Upstream 100 bases:

>100_bases
GATTGGTGACCGGAAATCGGCCATGCCTGCGGCAGCGCCGAGGCATGGCCGAGGAACGCGAGCGGAACCTCCTTGCCGCC
AAGCGGGCGAAATCTGAATC

Downstream 100 bases:

>100_bases
CCTTCGACATCAATGTCATCATCGAACAGTGGCCCGCCATCGTCAGCGGTGCGGGCGTGACGATCATGATCTGGATTCTC
GGCACCACTGCTGCCGCCGT

Product: putative amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSIKLFELLLQASIYTVTISVVSILIGFAIAILLSGMLLSGRSLFVRSAQIFISFFRGVPLLVQLLLIYNLLPAIGINVP
SIVAAIIGLSLCTAAYQAENLRGGFASVPLGLLESAEMVGLTPRQVFRRIKVPIALRLTFPALVNEAILILKASSLVSVV
GIVELTRMAQDLAGSTFLPLQIFASAGLIYLMINWLVALAGGMIENRLPGVPR

Sequences:

>Translated_213_residues
MSIKLFELLLQASIYTVTISVVSILIGFAIAILLSGMLLSGRSLFVRSAQIFISFFRGVPLLVQLLLIYNLLPAIGINVP
SIVAAIIGLSLCTAAYQAENLRGGFASVPLGLLESAEMVGLTPRQVFRRIKVPIALRLTFPALVNEAILILKASSLVSVV
GIVELTRMAQDLAGSTFLPLQIFASAGLIYLMINWLVALAGGMIENRLPGVPR
>Mature_212_residues
SIKLFELLLQASIYTVTISVVSILIGFAIAILLSGMLLSGRSLFVRSAQIFISFFRGVPLLVQLLLIYNLLPAIGINVPS
IVAAIIGLSLCTAAYQAENLRGGFASVPLGLLESAEMVGLTPRQVFRRIKVPIALRLTFPALVNEAILILKASSLVSVVG
IVELTRMAQDLAGSTFLPLQIFASAGLIYLMINWLVALAGGMIENRLPGVPR

Specific function: Component of the nopaline active transport system probably consisting of four subunits:Q, M, P and T. This system is also capable of transporting octopine provided that catabolic functions are induced with nopaline [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=201, Percent_Identity=36.81592039801, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1788646, Length=198, Percent_Identity=32.3232323232323, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1787030, Length=189, Percent_Identity=31.7460317460317, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1788645, Length=192, Percent_Identity=30.2083333333333, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787086, Length=203, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786874, Length=211, Percent_Identity=27.4881516587678, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1786873, Length=194, Percent_Identity=27.8350515463918, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082239, Length=124, Percent_Identity=37.0967741935484, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787087, Length=203, Percent_Identity=26.1083743842365, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI48994930, Length=212, Percent_Identity=27.8301886792453, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22805; Mature: 22674

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKLFELLLQASIYTVTISVVSILIGFAIAILLSGMLLSGRSLFVRSAQIFISFFRGVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHH
LLVQLLLIYNLLPAIGINVPSIVAAIIGLSLCTAAYQAENLRGGFASVPLGLLESAEMVG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHCHHHHC
LTPRQVFRRIKVPIALRLTFPALVNEAILILKASSLVSVVGIVELTRMAQDLAGSTFLPL
CCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QIFASAGLIYLMINWLVALAGGMIENRLPGVPR
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SIKLFELLLQASIYTVTISVVSILIGFAIAILLSGMLLSGRSLFVRSAQIFISFFRGVP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHH
LLVQLLLIYNLLPAIGINVPSIVAAIIGLSLCTAAYQAENLRGGFASVPLGLLESAEMVG
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHCHHHHC
LTPRQVFRRIKVPIALRLTFPALVNEAILILKASSLVSVVGIVELTRMAQDLAGSTFLPL
CCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
QIFASAGLIYLMINWLVALAGGMIENRLPGVPR
HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1732218; 11743193; 11743194 [H]