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The map label for this gene is yckA [H]

Identifier: 190895057

GI number: 190895057

Start: 778662

End: 779330

Strand: Reverse

Name: yckA [H]

Synonym: RHECIAT_PC0000723

Alternate gene names: 190895057

Gene position: 779330-778662 (Counterclockwise)

Preceding gene: 190895058

Following gene: 190895056

Centisome position: 71.4

GC content: 57.85

Gene sequence:

>669_bases
ATGACCTTCGACATCAATGTCATCATCGAACAGTGGCCCGCCATCGTCAGCGGTGCGGGCGTGACGATCATGATCTGGAT
TCTCGGCACCACTGCTGCCGCCGTCATCGGCTTCCTGGTCGCAGTCGCGAGGCAATATGGCGGCGTCCTGATCGACAAGG
CGCTGGGTGGCGTCGTCGCTGTTTTGCGCGGCACGCCGTTTCTCATCCAGATATTCCTGGTCTATTACGGCGGTCCCTTC
ATCGGCCTTGACCTCGATCCCGTGCCCGCCGGATTGATCGGCATTTCGATCTATGGCGCGGCCTATTTCAGCGAGATCTT
CCGTTCGGGCTTTCAGGCCGTGCCGAAGGGCCATATCGAGGCCGGCGAATGCGTCGGCTTGACGCGGCGGCAGATCGTCT
GGCGCATTCTGTTGCCGGAAATGACGATGCTGGTGTTGCCACCATCCGTGAACATGGTGGTTATCCTGATGAAGGAGACG
GCGGTCTTATCCATCATCACTGTGCCGGAGTTGACGGCAACGCTGAGCGCTATCGGATCGCAGCAATATGCCTTCGTCGA
AGCATTGTCCGTGCTGGCGCTCTTCTATTGGGTGCTCGTCGAACTCACCGGTTGGCTTGGCAATATTGCCGAAACGAAAC
TTTCCAGACTCAGGTTTTTCAACGCATGA

Upstream 100 bases:

>100_bases
TACAGATTTTCGCATCTGCAGGCCTCATCTATCTGATGATCAACTGGCTGGTCGCGCTTGCCGGCGGCATGATCGAAAAC
AGGTTGCCCGGGGTGCCGCG

Downstream 100 bases:

>100_bases
GCGTCCCCGCTATCGCAGTCAAAAATCTCATCAAGACTTTCGGAGAGACCACGGTCCTTCATGGCATCGATCTTGTCATC
GAGCCCGGGCAGGTTTCCTG

Product: putative amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTFDINVIIEQWPAIVSGAGVTIMIWILGTTAAAVIGFLVAVARQYGGVLIDKALGGVVAVLRGTPFLIQIFLVYYGGPF
IGLDLDPVPAGLIGISIYGAAYFSEIFRSGFQAVPKGHIEAGECVGLTRRQIVWRILLPEMTMLVLPPSVNMVVILMKET
AVLSIITVPELTATLSAIGSQQYAFVEALSVLALFYWVLVELTGWLGNIAETKLSRLRFFNA

Sequences:

>Translated_222_residues
MTFDINVIIEQWPAIVSGAGVTIMIWILGTTAAAVIGFLVAVARQYGGVLIDKALGGVVAVLRGTPFLIQIFLVYYGGPF
IGLDLDPVPAGLIGISIYGAAYFSEIFRSGFQAVPKGHIEAGECVGLTRRQIVWRILLPEMTMLVLPPSVNMVVILMKET
AVLSIITVPELTATLSAIGSQQYAFVEALSVLALFYWVLVELTGWLGNIAETKLSRLRFFNA
>Mature_221_residues
TFDINVIIEQWPAIVSGAGVTIMIWILGTTAAAVIGFLVAVARQYGGVLIDKALGGVVAVLRGTPFLIQIFLVYYGGPFI
GLDLDPVPAGLIGISIYGAAYFSEIFRSGFQAVPKGHIEAGECVGLTRRQIVWRILLPEMTMLVLPPSVNMVVILMKETA
VLSIITVPELTATLSAIGSQQYAFVEALSVLALFYWVLVELTGWLGNIAETKLSRLRFFNA

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=31.9444444444444, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787030, Length=198, Percent_Identity=33.8383838383838, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1788646, Length=185, Percent_Identity=32.972972972973, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787087, Length=191, Percent_Identity=25.130890052356, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788645, Length=220, Percent_Identity=24.5454545454545, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=27.3170731707317, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787086, Length=173, Percent_Identity=25.4335260115607, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786873, Length=205, Percent_Identity=24.390243902439, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23977; Mature: 23846

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDINVIIEQWPAIVSGAGVTIMIWILGTTAAAVIGFLVAVARQYGGVLIDKALGGVVA
CEEEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHH
VLRGTPFLIQIFLVYYGGPFIGLDLDPVPAGLIGISIYGAAYFSEIFRSGFQAVPKGHIE
HHCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGECVGLTRRQIVWRILLPEMTMLVLPPSVNMVVILMKETAVLSIITVPELTATLSAIGS
CCHHHCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCEEEEEEEHHHHHHHHHHHCC
QQYAFVEALSVLALFYWVLVELTGWLGNIAETKLSRLRFFNA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFDINVIIEQWPAIVSGAGVTIMIWILGTTAAAVIGFLVAVARQYGGVLIDKALGGVVA
EEEEEEHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHH
VLRGTPFLIQIFLVYYGGPFIGLDLDPVPAGLIGISIYGAAYFSEIFRSGFQAVPKGHIE
HHCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AGECVGLTRRQIVWRILLPEMTMLVLPPSVNMVVILMKETAVLSIITVPELTATLSAIGS
CCHHHCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCEEEEEEEHHHHHHHHHHHCC
QQYAFVEALSVLALFYWVLVELTGWLGNIAETKLSRLRFFNA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]