| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is vbsO [H]
Identifier: 190895015
GI number: 190895015
Start: 735871
End: 737229
Strand: Reverse
Name: vbsO [H]
Synonym: RHECIAT_PC0000681
Alternate gene names: 190895015
Gene position: 737229-735871 (Counterclockwise)
Preceding gene: 190895016
Following gene: 190895010
Centisome position: 67.54
GC content: 63.72
Gene sequence:
>1359_bases ATGACCGTCGCTTTTACCCGCAGGGACGCCCTCAACGAGCCGCTCGATCTTGCCGGGATCGGCATCGGTCCCTCCAATCT GAGCCTCGCCTGCCTGCTGGAATCCGTGCCCGAGGTCCGCAGCCGCTTCTTCGAGCGGCGCGGCGCCTTCGACTGGCATC CCGGCATGATGATGCCCGGCGTCGAGCTGCAGTCGTCCTTCCTGAAGGACCTCGTCACCCCGGTCCTGCCGACGAGCCGC TGGTCCTTCGTCTCCTATCTGGTGGCGCATAAGAGGCTCTACGCCTTCCTGAACGCCAATTACGACGCCGTGCCCCGGCA GGAATTCGCGCGTTATCTCGCCTGGGTCGCCAATGGCGTCGACGGTTTGCGTTACGCAACTGACATCCACGACGTGGAGC ACCGCGACGACCGTTTCGTCCTGCGCTTCGACAACGGCCAGGAGGAAGCGAAGAACCTGGTGATCGGCACGGGATCTTCG CCCTTCGTGCCCGATTGGGCGAAATCCTTCCTGGGCGCCGATTGCTTCCACAACAGCGAGGCCAAGTCGCGCCTCAAGGA TCTTCGCGCCGCCCGCATCGTCGTGGTCGGCGGCGGCCAGAGCGGCGGCGAGGTGGTCGAAGCGCTGCTTGGCACTCCTG ATGCGATGAAGGAGCTGATCTGGATCAGCCGGCGCCATAATTTCGAGCCGATCAACGACACGCCGTTTTCGAACCAGGTC TTCTCGCCGGAATATGTGCAGGCCTATCTCAAGCTCAGCGGCGAGCAGAAACAGGCGGCGCTGAAGAACTCGATCCTGAC CAGCGACGGCCTGTCGATTTCGACGATCCACTCGATCTACCGCCGCCTCTACGCGCTGCGCTACCTCGATCAGAGCACCC TCACCGCATCCCTGTCGCCGAACCGCGACGTGATCCAGATGGAGCGGGACGGCAATGCCTATCGGCTGATCGTCCGCAAC CACTTCGACGGCGGGATCGAGGTGCTGCATGCCGATGCGGTGGTGCTGGCAACCGGCTACAGGTTCCGTTTGCCGGATGC GCTCGGCTCGCTCAGCGAAAGGATAAGCCTCGACAGAAACGGCTATCCCACCTTGAACGACGACTACACGATGCAGTGGA CAGGTCCGCGGACCAACCGGCTGTTTGCGCAGAATGCCGGCCGATACTCGCACGGCATCGCCGACTCGCAGCTCAGCCTC ATGGCCTGGCGCAGCGCCAAGATCGTCAACACGCTTCTCGGCCGGCAGCATTTCGATGCCGAGCCCGACAATGCGCAGCT GGTCTGGGCGACGGAGGCCGCTTCCGCCATGCCGCATCAGTTGCGGGCCGGCTATTCGGACGGCCTGCTCTCGTCCTGA
Upstream 100 bases:
>100_bases CCGAAATCATCACCGGCACCAACCATCTGCACATGATCGGGTCTCCCGCCTTCCATTCAAGGCTTGCCCTGCGTCTCAAG GAAACAGAGAAGGATAACGC
Downstream 100 bases:
>100_bases AACATCCGGAGACGAATGCCGGGAGCGCCGGATTGGCAGCGGACGGCCAGCGCGACGACGTGCCGGCTGCCGCTCTCGAG CAGACGGTGATGCCATTGCC
Product: L-lysine 6-monooxygenase (NADPH) protein
Products: NA
Alternate protein names: Lysine 6-N-hydroxylase; Lysine N(6)-hydroxylase; Lysine-N-oxygenase [H]
Number of amino acids: Translated: 452; Mature: 451
Protein sequence:
>452_residues MTVAFTRRDALNEPLDLAGIGIGPSNLSLACLLESVPEVRSRFFERRGAFDWHPGMMMPGVELQSSFLKDLVTPVLPTSR WSFVSYLVAHKRLYAFLNANYDAVPRQEFARYLAWVANGVDGLRYATDIHDVEHRDDRFVLRFDNGQEEAKNLVIGTGSS PFVPDWAKSFLGADCFHNSEAKSRLKDLRAARIVVVGGGQSGGEVVEALLGTPDAMKELIWISRRHNFEPINDTPFSNQV FSPEYVQAYLKLSGEQKQAALKNSILTSDGLSISTIHSIYRRLYALRYLDQSTLTASLSPNRDVIQMERDGNAYRLIVRN HFDGGIEVLHADAVVLATGYRFRLPDALGSLSERISLDRNGYPTLNDDYTMQWTGPRTNRLFAQNAGRYSHGIADSQLSL MAWRSAKIVNTLLGRQHFDAEPDNAQLVWATEAASAMPHQLRAGYSDGLLSS
Sequences:
>Translated_452_residues MTVAFTRRDALNEPLDLAGIGIGPSNLSLACLLESVPEVRSRFFERRGAFDWHPGMMMPGVELQSSFLKDLVTPVLPTSR WSFVSYLVAHKRLYAFLNANYDAVPRQEFARYLAWVANGVDGLRYATDIHDVEHRDDRFVLRFDNGQEEAKNLVIGTGSS PFVPDWAKSFLGADCFHNSEAKSRLKDLRAARIVVVGGGQSGGEVVEALLGTPDAMKELIWISRRHNFEPINDTPFSNQV FSPEYVQAYLKLSGEQKQAALKNSILTSDGLSISTIHSIYRRLYALRYLDQSTLTASLSPNRDVIQMERDGNAYRLIVRN HFDGGIEVLHADAVVLATGYRFRLPDALGSLSERISLDRNGYPTLNDDYTMQWTGPRTNRLFAQNAGRYSHGIADSQLSL MAWRSAKIVNTLLGRQHFDAEPDNAQLVWATEAASAMPHQLRAGYSDGLLSS >Mature_451_residues TVAFTRRDALNEPLDLAGIGIGPSNLSLACLLESVPEVRSRFFERRGAFDWHPGMMMPGVELQSSFLKDLVTPVLPTSRW SFVSYLVAHKRLYAFLNANYDAVPRQEFARYLAWVANGVDGLRYATDIHDVEHRDDRFVLRFDNGQEEAKNLVIGTGSSP FVPDWAKSFLGADCFHNSEAKSRLKDLRAARIVVVGGGQSGGEVVEALLGTPDAMKELIWISRRHNFEPINDTPFSNQVF SPEYVQAYLKLSGEQKQAALKNSILTSDGLSISTIHSIYRRLYALRYLDQSTLTASLSPNRDVIQMERDGNAYRLIVRNH FDGGIEVLHADAVVLATGYRFRLPDALGSLSERISLDRNGYPTLNDDYTMQWTGPRTNRLFAQNAGRYSHGIADSQLSLM AWRSAKIVNTLLGRQHFDAEPDNAQLVWATEAASAMPHQLRAGYSDGLLSS
Specific function: This is one of the proteins involved in the biosynthesis of siderophores (such as the dihydroxamate siderophore, aerobactin), which are chelators that mediate the high-affinity iron transport systems induced by the organism under iron-stressed conditions
COG id: COG3486
COG function: function code Q; Lysine/ornithine N-monooxygenase
Gene ontology:
Cell location: Cytoplasm. Cell membrane [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 [H]
Pfam domain/function: PF07992 Pyr_redox_2 [H]
EC number: =1.14.13.59 [H]
Molecular weight: Translated: 50476; Mature: 50344
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAFTRRDALNEPLDLAGIGIGPSNLSLACLLESVPEVRSRFFERRGAFDWHPGMMMPG CEEEEECHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VELQSSFLKDLVTPVLPTSRWSFVSYLVAHKRLYAFLNANYDAVPRQEFARYLAWVANGV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC DGLRYATDIHDVEHRDDRFVLRFDNGQEEAKNLVIGTGSSPFVPDWAKSFLGADCFHNSE CHHHHHHHHHHCCCCCCEEEEEECCCHHHCCEEEEECCCCCCCCHHHHHHHCCHHHCCHH AKSRLKDLRAARIVVVGGGQSGGEVVEALLGTPDAMKELIWISRRHNFEPINDTPFSNQV HHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC FSPEYVQAYLKLSGEQKQAALKNSILTSDGLSISTIHSIYRRLYALRYLDQSTLTASLSP CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEECCC NRDVIQMERDGNAYRLIVRNHFDGGIEVLHADAVVLATGYRFRLPDALGSLSERISLDRN CCCEEEEECCCCEEEEEEEECCCCCEEEEECCEEEEECCCEEECCHHHHHHHHHHCCCCC GYPTLNDDYTMQWTGPRTNRLFAQNAGRYSHGIADSQLSLMAWRSAKIVNTLLGRQHFDA CCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC EPDNAQLVWATEAASAMPHQLRAGYSDGLLSS CCCCCEEEEEECHHHHCCHHHHCCCCCCCCCC >Mature Secondary Structure TVAFTRRDALNEPLDLAGIGIGPSNLSLACLLESVPEVRSRFFERRGAFDWHPGMMMPG EEEEECHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC VELQSSFLKDLVTPVLPTSRWSFVSYLVAHKRLYAFLNANYDAVPRQEFARYLAWVANGV HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC DGLRYATDIHDVEHRDDRFVLRFDNGQEEAKNLVIGTGSSPFVPDWAKSFLGADCFHNSE CHHHHHHHHHHCCCCCCEEEEEECCCHHHCCEEEEECCCCCCCCHHHHHHHCCHHHCCHH AKSRLKDLRAARIVVVGGGQSGGEVVEALLGTPDAMKELIWISRRHNFEPINDTPFSNQV HHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC FSPEYVQAYLKLSGEQKQAALKNSILTSDGLSISTIHSIYRRLYALRYLDQSTLTASLSP CCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHEEEECCC NRDVIQMERDGNAYRLIVRNHFDGGIEVLHADAVVLATGYRFRLPDALGSLSERISLDRN CCCEEEEECCCCEEEEEEEECCCCCEEEEECCEEEEECCCEEECCHHHHHHHHHHCCCCC GYPTLNDDYTMQWTGPRTNRLFAQNAGRYSHGIADSQLSLMAWRSAKIVNTLLGRQHFDA CCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC EPDNAQLVWATEAASAMPHQLRAGYSDGLLSS CCCCCEEEEEECHHHHCCHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3275632; 10064136 [H]