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The map label for this gene is yfgC [C]

Identifier: 190571576

GI number: 190571576

Start: 1270214

End: 1271503

Strand: Direct

Name: yfgC [C]

Synonym: WPa_1196

Alternate gene names: 190571576

Gene position: 1270214-1271503 (Clockwise)

Preceding gene: 190571575

Following gene: 190571580

Centisome position: 85.68

GC content: 32.02

Gene sequence:

>1290_bases
ATGTCTAAGCTTTTTGTTTTACTATTTTTTTTCGTATACTGTAATAGCGCTTACTCTGTTAGTATTATTAGAGATAGTGA
AGTGGAAGCGGTAGTTAAGGATCTAGCGCAACCTTTATTTTCTGCTGCGGGTATTGATAATGATAAAATAAAAGTTTTTA
TAGTTGATGATAGATCGATTAATGCTTTTGTAATTAACAATAATAGCATTTTCATTCATTTAGGGCTTTTACAATATTCG
ACTGAACCTTATGTCTTACTTGGTATATTAGCACATGAAATTGCTCATATATCTGCTGGTCATGTATTACAAATGAGTAG
TGCTGTAGGTTATTTTCAATCAATAGCAATGATTAGTTATATGGTAGGATTAGTTTCTAGTATTGTCATTAACCCTCAGG
TTGCGAGTGCAATCTTGCTTAGTGGTGTAACGCTTAGTTCAAGGTTGTTTTTTAACTATTCTCAAGAGCAAGAGAGTGTA
GCAGATAGCTATGCTTTAAGATACCTAGATGAATCTGGCTATGATAATTTGGGTATGAAAGAGATTTTTGACTATTTTAA
GAGTATTGAGCATGAAAACACTGAAGAGTATTTCCGCACTCACCCACTTAGTGATAAGCGTATATTTGCTGTACAGAATT
ATAAGGTTAAAAACAATATAAAACCAATCCTTGCAGATAAATTGCTGAAGTTTGAGCGTATGGTTGCAAAGCTAGACTCT
TTTTTTGCTCCTATTCATGTGTTATCTAATAAATATGAAGGTAGTTCTAAGTATGTAAATGCTGTAATTCACTATAGGCA
AGGAAAGATAGAAGAGGCTATTACTAAAGTTAATTCATTGATTCAAGAGTCACGCAATGATCCTTATTTATATGAATTAA
AAGCGGAGATGTTATACAAAGCTGGAAATTTAAGTGAAGCAATAAAAATGTATGAAGAATCACTTAGATATTTATCTGAG
AAGAATAACTATTTAGTGAAACTTGCGTTATCTCATACTTTATTATTACACGGTGAAATAGAGAAGGCAATTTTTTACCT
AGAGCAGGTTGCAAACGTAGAAACAAATAACGCCTTTGTCTGGAAGTATTTAAGTATTGCATATAAACGTAGCGCTGATA
TGGCAATGTATTATTTTGCTTTGACGAAAAAGGCTTGTATTGAAGGTAATTTAGAGAAATTTATGAAGTACGCTGAGTTA
GCTATTAAAACTTTACCGAAAGACAGTCATTATTTGTTACAGATTGAAGACATGAAGGAACAATACACACAAAAACATCC
TGATTTTTAA

Upstream 100 bases:

>100_bases
TTATCAGTTACGTTCAAAATTTAAACTAGCGTTTATAGATTCGTATAGTTTAAGTGTTAAAATATAAAATTCCTCAAAGT
TATACAAACAAGGAATTTCC

Downstream 100 bases:

>100_bases
GTTATTTTTCCCCACACTTGCTCAACATACTATCTTGTTTAATGCTATCGGGTATAATTTTCATTATAATCGCTTTGGCA
CCAAAAAATACACCACAAAA

Product: peptidase, M48 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MSKLFVLLFFFVYCNSAYSVSIIRDSEVEAVVKDLAQPLFSAAGIDNDKIKVFIVDDRSINAFVINNNSIFIHLGLLQYS
TEPYVLLGILAHEIAHISAGHVLQMSSAVGYFQSIAMISYMVGLVSSIVINPQVASAILLSGVTLSSRLFFNYSQEQESV
ADSYALRYLDESGYDNLGMKEIFDYFKSIEHENTEEYFRTHPLSDKRIFAVQNYKVKNNIKPILADKLLKFERMVAKLDS
FFAPIHVLSNKYEGSSKYVNAVIHYRQGKIEEAITKVNSLIQESRNDPYLYELKAEMLYKAGNLSEAIKMYEESLRYLSE
KNNYLVKLALSHTLLLHGEIEKAIFYLEQVANVETNNAFVWKYLSIAYKRSADMAMYYFALTKKACIEGNLEKFMKYAEL
AIKTLPKDSHYLLQIEDMKEQYTQKHPDF

Sequences:

>Translated_429_residues
MSKLFVLLFFFVYCNSAYSVSIIRDSEVEAVVKDLAQPLFSAAGIDNDKIKVFIVDDRSINAFVINNNSIFIHLGLLQYS
TEPYVLLGILAHEIAHISAGHVLQMSSAVGYFQSIAMISYMVGLVSSIVINPQVASAILLSGVTLSSRLFFNYSQEQESV
ADSYALRYLDESGYDNLGMKEIFDYFKSIEHENTEEYFRTHPLSDKRIFAVQNYKVKNNIKPILADKLLKFERMVAKLDS
FFAPIHVLSNKYEGSSKYVNAVIHYRQGKIEEAITKVNSLIQESRNDPYLYELKAEMLYKAGNLSEAIKMYEESLRYLSE
KNNYLVKLALSHTLLLHGEIEKAIFYLEQVANVETNNAFVWKYLSIAYKRSADMAMYYFALTKKACIEGNLEKFMKYAEL
AIKTLPKDSHYLLQIEDMKEQYTQKHPDF
>Mature_428_residues
SKLFVLLFFFVYCNSAYSVSIIRDSEVEAVVKDLAQPLFSAAGIDNDKIKVFIVDDRSINAFVINNNSIFIHLGLLQYST
EPYVLLGILAHEIAHISAGHVLQMSSAVGYFQSIAMISYMVGLVSSIVINPQVASAILLSGVTLSSRLFFNYSQEQESVA
DSYALRYLDESGYDNLGMKEIFDYFKSIEHENTEEYFRTHPLSDKRIFAVQNYKVKNNIKPILADKLLKFERMVAKLDSF
FAPIHVLSNKYEGSSKYVNAVIHYRQGKIEEAITKVNSLIQESRNDPYLYELKAEMLYKAGNLSEAIKMYEESLRYLSEK
NNYLVKLALSHTLLLHGEIEKAIFYLEQVANVETNNAFVWKYLSIAYKRSADMAMYYFALTKKACIEGNLEKFMKYAELA
IKTLPKDSHYLLQIEDMKEQYTQKHPDF

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=369, Percent_Identity=21.1382113821138, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 49203; Mature: 49072

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50293 TPR_REGION ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLFVLLFFFVYCNSAYSVSIIRDSEVEAVVKDLAQPLFSAAGIDNDKIKVFIVDDRSI
CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCE
NAFVINNNSIFIHLGLLQYSTEPYVLLGILAHEIAHISAGHVLQMSSAVGYFQSIAMISY
EEEEEECCEEEEEEEEEHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
MVGLVSSIVINPQVASAILLSGVTLSSRLFFNYSQEQESVADSYALRYLDESGYDNLGMK
HHHHHHHHHCCHHHHHHHHHCCCEEEHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCHH
EIFDYFKSIEHENTEEYFRTHPLSDKRIFAVQNYKVKNNIKPILADKLLKFERMVAKLDS
HHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHH
FFAPIHVLSNKYEGSSKYVNAVIHYRQGKIEEAITKVNSLIQESRNDPYLYELKAEMLYK
HHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
AGNLSEAIKMYEESLRYLSEKNNYLVKLALSHTLLLHGEIEKAIFYLEQVANVETNNAFV
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHCCCCCCEEE
WKYLSIAYKRSADMAMYYFALTKKACIEGNLEKFMKYAELAIKTLPKDSHYLLQIEDMKE
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
QYTQKHPDF
HHHHCCCCC
>Mature Secondary Structure 
SKLFVLLFFFVYCNSAYSVSIIRDSEVEAVVKDLAQPLFSAAGIDNDKIKVFIVDDRSI
CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCE
NAFVINNNSIFIHLGLLQYSTEPYVLLGILAHEIAHISAGHVLQMSSAVGYFQSIAMISY
EEEEEECCEEEEEEEEEHCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
MVGLVSSIVINPQVASAILLSGVTLSSRLFFNYSQEQESVADSYALRYLDESGYDNLGMK
HHHHHHHHHCCHHHHHHHHHCCCEEEHHEEEEECHHHHHHHHHHHHHHHCCCCCCCCCHH
EIFDYFKSIEHENTEEYFRTHPLSDKRIFAVQNYKVKNNIKPILADKLLKFERMVAKLDS
HHHHHHHHHCCCCCHHHHHCCCCCCCEEEEEECEEECCCCCHHHHHHHHHHHHHHHHHHH
FFAPIHVLSNKYEGSSKYVNAVIHYRQGKIEEAITKVNSLIQESRNDPYLYELKAEMLYK
HHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
AGNLSEAIKMYEESLRYLSEKNNYLVKLALSHTLLLHGEIEKAIFYLEQVANVETNNAFV
CCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHCCCCCCEEE
WKYLSIAYKRSADMAMYYFALTKKACIEGNLEKFMKYAELAIKTLPKDSHYLLQIEDMKE
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
QYTQKHPDF
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]