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The map label for this gene is 190571470

Identifier: 190571470

GI number: 190571470

Start: 1155968

End: 1156567

Strand: Reverse

Name: 190571470

Synonym: WPa_1085

Alternate gene names: NA

Gene position: 1156567-1155968 (Counterclockwise)

Preceding gene: 190571471

Following gene: 190571453

Centisome position: 78.02

GC content: 31.67

Gene sequence:

>600_bases
ATGATAAAGTTTATAAGGTTATTGTCTAGTTTGCTAATAACAGTAGCAGCTATCTTCTTAGGTTATTGTTATTTTACTAA
GCAAGGCATATTTGTTTCACAAAATACAGAAATTAAAATAGGTGGGGATTTTTCTTTGATTAACCAAAACGGGCAAATAG
TACGCAGTAGTGATTTCAAAGATAAGTATATGATGATTTTTTTTGGATTTTCCTCATGTAAAAGAATTTGCCCTATGAAC
CTTGGAATAATTTCAGAAACACTTGCAAAGTTAGACGAGAAAACTGACAACAAGCTACAAACATTTTTTATCACAGTTGA
TCCTGAGCGCGATAATACAGAAAGGCTTAAAGAATTTCAGCAGCAATTTGACCATAGAATACAAATGCTCACTGGTGAAA
GACAAAAAATAGATGAAGTAGTTGCAAAGTATAAAGTATATGCAAGTAAAGTAGATGGAGAAGAGGAAATTAACCATTCT
TCAATGATATACCTTATTAGCCCTGAAGGAAAATATGTCACACACTTTGTAGCTGATTTAAATTCAGATGAAAGTCAATC
TGATAAGATTCTGGCTGAGATAAAAAAATATGTAAGCTGA

Upstream 100 bases:

>100_bases
ATAAGAAATTGTTAGATAAAATTAACAACCCACTTTGGAAGGAATATATTGAATCAATCAACTAATCAATATATGATTTA
ACTTTATTGGAAACGCTTTA

Downstream 100 bases:

>100_bases
ACTAAAGAGCTTAGCTTACTTTAAATTTATGCTAACAGCTATTTTGATTAAACTAAGTCGTTTTTTTAATTTTTTCTAGG
ATCAACTCAGCAGCTTTTTG

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIKFIRLLSSLLITVAAIFLGYCYFTKQGIFVSQNTEIKIGGDFSLINQNGQIVRSSDFKDKYMMIFFGFSSCKRICPMN
LGIISETLAKLDEKTDNKLQTFFITVDPERDNTERLKEFQQQFDHRIQMLTGERQKIDEVVAKYKVYASKVDGEEEINHS
SMIYLISPEGKYVTHFVADLNSDESQSDKILAEIKKYVS

Sequences:

>Translated_199_residues
MIKFIRLLSSLLITVAAIFLGYCYFTKQGIFVSQNTEIKIGGDFSLINQNGQIVRSSDFKDKYMMIFFGFSSCKRICPMN
LGIISETLAKLDEKTDNKLQTFFITVDPERDNTERLKEFQQQFDHRIQMLTGERQKIDEVVAKYKVYASKVDGEEEINHS
SMIYLISPEGKYVTHFVADLNSDESQSDKILAEIKKYVS
>Mature_199_residues
MIKFIRLLSSLLITVAAIFLGYCYFTKQGIFVSQNTEIKIGGDFSLINQNGQIVRSSDFKDKYMMIFFGFSSCKRICPMN
LGIISETLAKLDEKTDNKLQTFFITVDPERDNTERLKEFQQQFDHRIQMLTGERQKIDEVVAKYKVYASKVDGEEEINHS
SMIYLISPEGKYVTHFVADLNSDESQSDKILAEIKKYVS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=142, Percent_Identity=31.6901408450704, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI281182727, Length=163, Percent_Identity=31.2883435582822, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI281182722, Length=163, Percent_Identity=31.2883435582822, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI281182716, Length=163, Percent_Identity=31.2883435582822, Blast_Score=98, Evalue=5e-21,
Organism=Homo sapiens, GI153791313, Length=163, Percent_Identity=31.2883435582822, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17531419, Length=153, Percent_Identity=27.4509803921569, Blast_Score=96, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6319498, Length=209, Percent_Identity=31.1004784688995, Blast_Score=105, Evalue=4e-24,
Organism=Saccharomyces cerevisiae, GI6319511, Length=166, Percent_Identity=35.5421686746988, Blast_Score=93, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19920710, Length=165, Percent_Identity=30.9090909090909, Blast_Score=103, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22934; Mature: 22934

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKFIRLLSSLLITVAAIFLGYCYFTKQGIFVSQNTEIKIGGDFSLINQNGQIVRSSDFK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEEEECCCCCEEECCCCC
DKYMMIFFGFSSCKRICPMNLGIISETLAKLDEKTDNKLQTFFITVDPERDNTERLKEFQ
CCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHH
QQFDHRIQMLTGERQKIDEVVAKYKVYASKVDGEEEINHSSMIYLISPEGKYVTHFVADL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEHHHHHHC
NSDESQSDKILAEIKKYVS
CCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKFIRLLSSLLITVAAIFLGYCYFTKQGIFVSQNTEIKIGGDFSLINQNGQIVRSSDFK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEEEECCCCCEEECCCCC
DKYMMIFFGFSSCKRICPMNLGIISETLAKLDEKTDNKLQTFFITVDPERDNTERLKEFQ
CCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHH
QQFDHRIQMLTGERQKIDEVVAKYKVYASKVDGEEEINHSSMIYLISPEGKYVTHFVADL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCEEHHHHHHC
NSDESQSDKILAEIKKYVS
CCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]