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The map label for this gene is dnaQ [H]

Identifier: 190571471

GI number: 190571471

Start: 1156603

End: 1157307

Strand: Reverse

Name: dnaQ [H]

Synonym: WPa_1086

Alternate gene names: 190571471

Gene position: 1157307-1156603 (Counterclockwise)

Preceding gene: 190571472

Following gene: 190571470

Centisome position: 78.07

GC content: 33.76

Gene sequence:

>705_bases
ATGAAAAGTAGGCTACGAGAAATAGTACTTGATACTGAAACTACAGGTCTTGATACTAAATCTGGACATCGAATTATTGA
GATAGGATGTGTAGAACTAATTAATCGTATTCCAACAGGTAAAACATTTCATCGATATCTCAATCCAGAAAGAGATATAC
CTTACCACTCATTTAAGATTCATGGTATTAGTGAGGAATTTTTGGAAGATAAACCACTATTCTCAGATGTTGCACTTGAA
TTTCTTGACTTCATATCCAATGACATTTTGGTGATTCATAATGCTGAATTCGATGTTAAGTTCCTTAATATGGAGTTAGG
CAAGTTAAATGCTGGGTTAATTTCCTCAGATAGAGTGCTAGATACATTACCACTTGCAAGAAAAAAGTTTGTAGGATCAC
CTGCTTCTTTAAATGCATTATGCAAGCGTTTTGATATATCGCTAGAAGGTAGAGAGTTACACGGAGCATTAGTTGATGCT
CAATTGCTTGCAAAGGTCTATGTTGAGCTTACAGGAGGATTGCAAACCTTTTTATTTAATAATGAATGTGCTCAGGACAA
TAACTCTACGTTTATTCAACATAAAGTGCGTAATTTAGCTCGCAGAGAACATTCACCAAGTATTAAAGAAATTGATGAGC
ATAAGAAATTGTTAGATAAAATTAACAACCCACTTTGGAAGGAATATATTGAATCAATCAACTAA

Upstream 100 bases:

>100_bases
TCAAAAAAAATATTAATTCATCAGATCTAACTTGGTTACTTGTTTCTATTAACTATAAGAAGGCAAGTACTGATAAAAAT
TTAACAACAAATGACAACTG

Downstream 100 bases:

>100_bases
TCAATATATGATTTAACTTTATTGGAAACGCTTTAATGATAAAGTTTATAAGGTTATTGTCTAGTTTGCTAATAACAGTA
GCAGCTATCTTCTTAGGTTA

Product: DNA polymerase III, epsilon subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEFLEDKPLFSDVALE
FLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDA
QLLAKVYVELTGGLQTFLFNNECAQDNNSTFIQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWKEYIESIN

Sequences:

>Translated_234_residues
MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEFLEDKPLFSDVALE
FLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDA
QLLAKVYVELTGGLQTFLFNNECAQDNNSTFIQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWKEYIESIN
>Mature_234_residues
MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKIHGISEEFLEDKPLFSDVALE
FLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVLDTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDA
QLLAKVYVELTGGLQTFLFNNECAQDNNSTFIQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWKEYIESIN

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=236, Percent_Identity=44.0677966101695, Blast_Score=184, Evalue=3e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 26741; Mature: 26741

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKI
CCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEE
HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVL
ECCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHH
DTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFLFN
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEC
NECAQDNNSTFIQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWKEYIESIN
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure
MKSRLREIVLDTETTGLDTKSGHRIIEIGCVELINRIPTGKTFHRYLNPERDIPYHSFKI
CCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEE
HGISEEFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELGKLNAGLISSDRVL
ECCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHH
DTLPLARKKFVGSPASLNALCKRFDISLEGRELHGALVDAQLLAKVYVELTGGLQTFLFN
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEEC
NECAQDNNSTFIQHKVRNLARREHSPSIKEIDEHKKLLDKINNPLWKEYIESIN
CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA