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The map label for this gene is rimM

Identifier: 190571183

GI number: 190571183

Start: 854485

End: 854985

Strand: Reverse

Name: rimM

Synonym: WPa_0781

Alternate gene names: 190571183

Gene position: 854985-854485 (Counterclockwise)

Preceding gene: 190571185

Following gene: 190571182

Centisome position: 57.67

GC content: 30.54

Gene sequence:

>501_bases
ATGAATATATGCCTCGGAATAATTACTTCTCCCCATGGAATCAAAGGAGCTGTTAAGATAAAAACCTTTACTGAAAAGCC
CGAAAATATTTTCCTATATGGTGAACTAATAAGCGGAAGTGAAAATTATAAAATAAGCTTGGTGTCTGTTGTCAGTAATA
ATTTAGTAATAGCAACAATTAGCGGTGTGAACTCCCGTAATGAAGCAGAACTTTTAAGAAATAAAAAGTTATATATAGAG
AGAAATAAGCTACCACAATTAAATGATGAGGATGAATTTTACCAAAATGATCTTGTGAATATGGAAGTAAGATTAGAAAG
TAATGAATTATATGGCTATGTGAAGTCTGTACATAATTTTGGCTCAGGGGATATATTAGAAATTTTGGTTATCAGCACAA
AAAAAAACATTATGCTATCTTTCACTAAAGAAATATTTCCATACATCAACATGAAGGAAAGATATATAGTAATCAACATG
CCAGAATTCATTGGCCAATAA

Upstream 100 bases:

>100_bases
CACACATTATCCACTATAATTATCACAATATTAATTGTATGTTAATTCAGTAAATTGTCAATTCTATAGACAAAAAGCTG
ATTTCAACTATCATATTAAT

Downstream 100 bases:

>100_bases
AAATTTTGATATTTGTATAAAGTTATTTATAATCATCAGACTAAATTAAAAGTGTAATTATGGCAGAAAGGGCTAATGAT
ATCAGGCCAGGTCAGGTACT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATISGVNSRNEAELLRNKKLYIE
RNKLPQLNDEDEFYQNDLVNMEVRLESNELYGYVKSVHNFGSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINM
PEFIGQ

Sequences:

>Translated_166_residues
MNICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATISGVNSRNEAELLRNKKLYIE
RNKLPQLNDEDEFYQNDLVNMEVRLESNELYGYVKSVHNFGSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINM
PEFIGQ
>Mature_166_residues
MNICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATISGVNSRNEAELLRNKKLYIE
RNKLPQLNDEDEFYQNDLVNMEVRLESNELYGYVKSVHNFGSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINM
PEFIGQ

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_WOLPP (B3CLX1)

Other databases:

- EMBL:   AM999887
- RefSeq:   YP_001975541.1
- ProteinModelPortal:   B3CLX1
- EnsemblBacteria:   EBWOLT00000000715
- GeneID:   6385094
- GenomeReviews:   AM999887_GR
- KEGG:   wpi:WPa_0781
- GeneTree:   EBGT00050000030954
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- ProtClustDB:   PRK14592
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18956; Mature: 18956

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATI
CCEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCEEEEEE
SGVNSRNEAELLRNKKLYIERNKLPQLNDEDEFYQNDLVNMEVRLESNELYGYVKSVHNF
ECCCCCCHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEEEEEECCHHHHHHHHHHCC
GSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINMPEFIGQ
CCCCEEEEEEEECCCCEEEEEHHHHCCCCCCCCEEEEEECHHHHCC
>Mature Secondary Structure
MNICLGIITSPHGIKGAVKIKTFTEKPENIFLYGELISGSENYKISLVSVVSNNLVIATI
CCEEEEEEECCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEEECCCEEEEEE
SGVNSRNEAELLRNKKLYIERNKLPQLNDEDEFYQNDLVNMEVRLESNELYGYVKSVHNF
ECCCCCCHHHHHHCCEEEEEECCCCCCCCCCHHHHCCEEEEEEEEECCHHHHHHHHHHCC
GSGDILEILVISTKKNIMLSFTKEIFPYINMKERYIVINMPEFIGQ
CCCCEEEEEEEECCCCEEEEEHHHHCCCCCCCCEEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA