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The map label for this gene is ybbD [H]

Identifier: 189499160

GI number: 189499160

Start: 169183

End: 170934

Strand: Reverse

Name: ybbD [H]

Synonym: Cphamn1_0174

Alternate gene names: 189499160

Gene position: 170934-169183 (Counterclockwise)

Preceding gene: 189499161

Following gene: 189499159

Centisome position: 6.25

GC content: 49.49

Gene sequence:

>1752_bases
ATGTTGATTCGATATCTTATGGCTGCAGTCTTTCTGCTGCTCTATACGTTTTCTTCTCCTCCCTCCAGACCCGCTCTTGC
AGAGGCCTTTCCGGCTTACAAGAACGCAACAGCACAGGAAATATTCAGAGAAAAAGACAAGTGGGTTGAAAAGCAGCTCA
GCGAGATGACGCTTTCTGATAAAATCGGTCAGATGCTAATCGCTCACAGCCCGGCAAAATTCCGAAGTACTGACGACAGT
TACTACAAGAAACTTTCCCTTCTGGTAAGCCAGGGTAAAGTCGGCGGGATCATGTTTCTCAAAGGCAATACCAACGATGC
CGCTGTTCTTGCCAACAGGTTTCAGTTTATTGCTCCAAGACCGCTGCTTATCAGTGCGGATATGGAAAAAGGACTTGCCA
TGAGACTTGACGGCGCCACAGAGTTTGCTCCAAGCATGGCCCTTTCGGCAACAGGCAGACCGGATCTTGTCTTCAAAATG
GCTGGCGTGATCGCTCAGGAAGCCAAAGCACTGGGCATCTACCACAGTTACGGGCCCAGTGTCGATCTGAACACTAACCC
GCTCAATCCGGTGATCAATACCAGGTCATACGGTGATAACATCCCCTTGACCATAGAGATGTCGAATGCGTTTATTGACG
GACTGCAATCGAACGGTATCATCGCCACAGCAAAGCATTTTCCCGGACACGGGGACGTCACGGTCGACAGTCATATCAAT
CTTCCTGTTCTCAACGCGGATAAAAAACGTCTGGAACGCGTTGAACTGAAACCATTCATAGCAGCTATAGACCACGGAAT
AATGAGCATCATGATCGGCCACCTCGCGATCCCGGCTTATACAGGCAGCATGACACCGGCGACGCTCTCATGGAGAATTG
TCACAAAACTCCTGAGAAAGGAACTGGGTTTCGATGGCCTCATCATTACCGACGCGCTGAACATGAAGGCGCTCTATCAG
TCCTACACTCTTGAAGATATTTCTTTACGTGCCGTTGAAGCAGGCAACGACCTGCTTCTTTTCTCACCTGACCCGGAACG
TACCCACACCACCCTGCTCAACGCTGTGAGAAGAGGCAAACTCTCGGAAAAACAGATCAACAAGTCCGTACGCCGGATAC
TTCTGGCCAAAAGGTGGCTTGGCCTTGATAAAAATCGCCTGGTCAACCTGAACAGTATCCACGGCCAGATGAACCTGAAA
AGCCATCGGGAACTTGCAGAGAATATCGCCGACAACGCTATAACCGTCATAAGAGACAAGCATCAGGCCCTTCCTGTCAG
GCAAGAAAACAAAAACAACATCCTGCATATCGTTCTCGAAAACAAGCGCTACTCACTGTCGGGAGAATCTTTTTCAGACA
AGCTGTACAGGGCATTCCAGGCTAAAACCATACGTCTGGACCATAACTCCAGCGCCCGTGACTATCTCGACGCTGCTGAT
AAAGCCAAACGCGCGTCGACCATTATCGTCTCAACCTATGTTGAAGTGCTTTCCGGCACAAAGTCACTGGCTGTAAGTAA
AGGGCAGGAGGAATTCATCAGCACACTTGTTCGCGATCTGCCGTCAAAGCGTTCATGTATTATGATTTCATTCGGAACGC
CCTACCTGATCAACCAGTTTCCCGACATACCTGCTTTCATCTGTACCTACTCATCTTCTGAGCTCAGTGAAGATTCCGCC
GTCAGGCTGCTGCAGGGAAAAATCAAGCCGACAGGAAAACTCCCCATATCCCTTACGGAAAACCGGCGGTAA

Upstream 100 bases:

>100_bases
CATCTTCCTGAATGAAGCAACTCTGGATTGAACGGTTTAGCCGTTCAATCGATTGATACGTGAACACGGTGGAAAGCTAA
ACATTCCCGGAGATCTTCTT

Downstream 100 bases:

>100_bases
TCGTCAACCTGTTCATTCAGGTATGGTTATGGGGTATCGGACTCCTCAAGCTTTTTTACTACATTACTTGCCTGCATCAA
AAAAGACAACGTTATGACGA

Product: glycoside hydrolase family 3 domain-containing protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFREKDKWVEKQLSEMTLSDKIGQMLIAHSPAKFRSTDDS
YYKKLSLLVSQGKVGGIMFLKGNTNDAAVLANRFQFIAPRPLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKM
AGVIAQEAKALGIYHSYGPSVDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSNGIIATAKHFPGHGDVTVDSHIN
LPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLAIPAYTGSMTPATLSWRIVTKLLRKELGFDGLIITDALNMKALYQ
SYTLEDISLRAVEAGNDLLLFSPDPERTHTTLLNAVRRGKLSEKQINKSVRRILLAKRWLGLDKNRLVNLNSIHGQMNLK
SHRELAENIADNAITVIRDKHQALPVRQENKNNILHIVLENKRYSLSGESFSDKLYRAFQAKTIRLDHNSSARDYLDAAD
KAKRASTIIVSTYVEVLSGTKSLAVSKGQEEFISTLVRDLPSKRSCIMISFGTPYLINQFPDIPAFICTYSSSELSEDSA
VRLLQGKIKPTGKLPISLTENRR

Sequences:

>Translated_583_residues
MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFREKDKWVEKQLSEMTLSDKIGQMLIAHSPAKFRSTDDS
YYKKLSLLVSQGKVGGIMFLKGNTNDAAVLANRFQFIAPRPLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKM
AGVIAQEAKALGIYHSYGPSVDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSNGIIATAKHFPGHGDVTVDSHIN
LPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLAIPAYTGSMTPATLSWRIVTKLLRKELGFDGLIITDALNMKALYQ
SYTLEDISLRAVEAGNDLLLFSPDPERTHTTLLNAVRRGKLSEKQINKSVRRILLAKRWLGLDKNRLVNLNSIHGQMNLK
SHRELAENIADNAITVIRDKHQALPVRQENKNNILHIVLENKRYSLSGESFSDKLYRAFQAKTIRLDHNSSARDYLDAAD
KAKRASTIIVSTYVEVLSGTKSLAVSKGQEEFISTLVRDLPSKRSCIMISFGTPYLINQFPDIPAFICTYSSSELSEDSA
VRLLQGKIKPTGKLPISLTENRR
>Mature_583_residues
MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFREKDKWVEKQLSEMTLSDKIGQMLIAHSPAKFRSTDDS
YYKKLSLLVSQGKVGGIMFLKGNTNDAAVLANRFQFIAPRPLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKM
AGVIAQEAKALGIYHSYGPSVDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSNGIIATAKHFPGHGDVTVDSHIN
LPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLAIPAYTGSMTPATLSWRIVTKLLRKELGFDGLIITDALNMKALYQ
SYTLEDISLRAVEAGNDLLLFSPDPERTHTTLLNAVRRGKLSEKQINKSVRRILLAKRWLGLDKNRLVNLNSIHGQMNLK
SHRELAENIADNAITVIRDKHQALPVRQENKNNILHIVLENKRYSLSGESFSDKLYRAFQAKTIRLDHNSSARDYLDAAD
KAKRASTIIVSTYVEVLSGTKSLAVSKGQEEFISTLVRDLPSKRSCIMISFGTPYLINQFPDIPAFICTYSSSELSEDSA
VRLLQGKIKPTGKLPISLTENRR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=258, Percent_Identity=27.906976744186, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788453, Length=594, Percent_Identity=21.2121212121212, Blast_Score=91, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 64703; Mature: 64703

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFREKDKWVEKQLSEMTLSD
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIGQMLIAHSPAKFRSTDDSYYKKLSLLVSQGKVGGIMFLKGNTNDAAVLANRFQFIAPR
HHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
PLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKMAGVIAQEAKALGIYHSYGPS
CEEEECCCCCCCEEEECCCHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCC
VDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSNGIIATAKHFPGHGDVTVDSHIN
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCEEEEECCCCCCCCEEECCCCC
LPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLAIPAYTGSMTPATLSWRIVTKLLRK
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
ELGFDGLIITDALNMKALYQSYTLEDISLRAVEAGNDLLLFSPDPERTHTTLLNAVRRGK
HCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCC
LSEKQINKSVRRILLAKRWLGLDKNRLVNLNSIHGQMNLKSHRELAENIADNAITVIRDK
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECH
HQALPVRQENKNNILHIVLENKRYSLSGESFSDKLYRAFQAKTIRLDHNSSARDYLDAAD
HHCCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHCEEEEECCCCCHHHHHHHHH
KAKRASTIIVSTYVEVLSGTKSLAVSKGQEEFISTLVRDLPSKRSCIMISFGTPYLINQF
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCC
PDIPAFICTYSSSELSEDSAVRLLQGKIKPTGKLPISLTENRR
CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC
>Mature Secondary Structure
MLIRYLMAAVFLLLYTFSSPPSRPALAEAFPAYKNATAQEIFREKDKWVEKQLSEMTLSD
CHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIGQMLIAHSPAKFRSTDDSYYKKLSLLVSQGKVGGIMFLKGNTNDAAVLANRFQFIAPR
HHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCC
PLLISADMEKGLAMRLDGATEFAPSMALSATGRPDLVFKMAGVIAQEAKALGIYHSYGPS
CEEEECCCCCCCEEEECCCHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEECCCCC
VDLNTNPLNPVINTRSYGDNIPLTIEMSNAFIDGLQSNGIIATAKHFPGHGDVTVDSHIN
CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCEEEEECCCCCCCCEEECCCCC
LPVLNADKKRLERVELKPFIAAIDHGIMSIMIGHLAIPAYTGSMTPATLSWRIVTKLLRK
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
ELGFDGLIITDALNMKALYQSYTLEDISLRAVEAGNDLLLFSPDPERTHTTLLNAVRRGK
HCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHCC
LSEKQINKSVRRILLAKRWLGLDKNRLVNLNSIHGQMNLKSHRELAENIADNAITVIRDK
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECH
HQALPVRQENKNNILHIVLENKRYSLSGESFSDKLYRAFQAKTIRLDHNSSARDYLDAAD
HHCCCCCCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHCEEEEECCCCCHHHHHHHHH
KAKRASTIIVSTYVEVLSGTKSLAVSKGQEEFISTLVRDLPSKRSCIMISFGTPYLINQF
HHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHCC
PDIPAFICTYSSSELSEDSAVRLLQGKIKPTGKLPISLTENRR
CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]