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The map label for this gene is 189499161

Identifier: 189499161

GI number: 189499161

Start: 171024

End: 171542

Strand: Reverse

Name: 189499161

Synonym: Cphamn1_0175

Alternate gene names: NA

Gene position: 171542-171024 (Counterclockwise)

Preceding gene: 189499162

Following gene: 189499160

Centisome position: 6.27

GC content: 47.01

Gene sequence:

>519_bases
ATGTCTTTACGCAGAACAAAAGTACTTGTCCTCAACAGCAGCTATGAACCGCTGACCATTTGTGATGCGCAAAAAGCCAT
AATTCTGCTTTTCTGCGGAAAAGCCGTATCGGTAGCTCATCACCCTGAACGGTTTGTCTGCACGGTATCAGAATCCTTTC
CTCTGCCGAGTATTGTGCGGTTGAATGTTTTTGTCAGAGTGCCGTATAAGCATATAATGCTGACCAGAAAAAATATTTTC
AGGCGGGACAACTTTCAGTGCCAGTACTGCGGAACATGCGGCACCCCGCTTACCATAGATCATATGACTCCTCGTTCACA
GGGCGGAGAAGACTCCTGGGAAAATCTGGTCACAGCCTGCGGCCCCTGTAACACAAAAAAAGGAAACAGAACCCCGCAGG
AAGCACGCATGATTCCGCAGAAAAAACCGATTCGTCCAAGCCATATCATGCTGATGCGGAAGTTCATTACAACCGTATCA
GAAGATTGGAAGCCTTATCTTTTCATGGCATCTTCCTGA

Upstream 100 bases:

>100_bases
TCACGTGTTAGTTGTCACGTACTAACTATTCACCTAAATGTGACTTCGACGTATTGGCAATTACGGAATATGAGTGTATA
CTCATACAAACGACGTTATC

Downstream 100 bases:

>100_bases
ATGAAGCAACTCTGGATTGAACGGTTTAGCCGTTCAATCGATTGATACGTGAACACGGTGGAAAGCTAAACATTCCCGGA
GATCTTCTTATGTTGATTCG

Product: HNH endonuclease

Products: NA

Alternate protein names: HNH Endonuclease Family Protein; Endonuclease; HNH Endonuclease Domain-Containing Protein; HNH Endonuclease Domain Protein; Restriction Endonuclease; Hnh Endonuclease; HNH Nuclease; McrA/HNH Family Nuclease; 5-Methylcytosine-Specific Restriction A; 5-Methylcytosine-Specific Restriction Protein; Nuclease; Restriction Endonuclease McrA/HNH Family; HNH EndonucleaseHNH Nuclease; HNH Family Endonuclease; LOW QUALITY PROTEIN Endonuclease; Hnh Endonuclease Domain Protein; 5-Methylcytosine-Specific Restriction Protein A

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVRLNVFVRVPYKHIMLTRKNIF
RRDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTACGPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVS
EDWKPYLFMASS

Sequences:

>Translated_172_residues
MSLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVRLNVFVRVPYKHIMLTRKNIF
RRDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTACGPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVS
EDWKPYLFMASS
>Mature_171_residues
SLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVRLNVFVRVPYKHIMLTRKNIFR
RDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTACGPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVSE
DWKPYLFMASS

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19648; Mature: 19517

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVR
CCCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEE
LNVFVRVPYKHIMLTRKNIFRRDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTAC
EEEEEECCHHHEEEEHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHC
GPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVSEDWKPYLFMASS
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure 
SLRRTKVLVLNSSYEPLTICDAQKAIILLFCGKAVSVAHHPERFVCTVSESFPLPSIVR
CCCCEEEEEEECCCCCEEEECCCCEEEEEECCCEEEECCCCCEEEEEECCCCCCCEEEE
LNVFVRVPYKHIMLTRKNIFRRDNFQCQYCGTCGTPLTIDHMTPRSQGGEDSWENLVTAC
EEEEEECCHHHEEEEHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHC
GPCNTKKGNRTPQEARMIPQKKPIRPSHIMLMRKFITTVSEDWKPYLFMASS
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA