| Definition | Chlorobium phaeobacteroides BS1 chromosome, complete genome. |
|---|---|
| Accession | NC_010831 |
| Length | 2,736,403 |
Click here to switch to the map view.
The map label for this gene is rbpB [H]
Identifier: 189499100
GI number: 189499100
Start: 99949
End: 100221
Strand: Reverse
Name: rbpB [H]
Synonym: Cphamn1_0106
Alternate gene names: 189499100
Gene position: 100221-99949 (Counterclockwise)
Preceding gene: 189499104
Following gene: 189499094
Centisome position: 3.66
GC content: 47.25
Gene sequence:
>273_bases ATGAACATTTACATTGGCAATCTACCCTACAGCTTATCTGAAGAGGAACTCAGCGATGCATTCGCTCAATTCGGTCAGGT AGACAGAGCGAACATTATCATGGATAAAGAAACCGGCCGCTCGAAAGGCTTCGGATTTGTTGAAATGCCAAACGACGATG AAGCACAAAATGCTATCGATTCTTTGCATGACAGTGATCTGAACGGCCGCTCTATCAAAGTCAATCAGGCAAGGCCCCGT GAAGAGCGACCCCCTCGGAGAGACAACTACTGA
Upstream 100 bases:
>100_bases ATCAGCCAATGGTTGGCTGATCGCTATCGGATAACGTGTGCTTTTGGTTATTTGACAGCGGTTCTCTTTCTATCAAAGCA CACGTCATCTTATATCAAAA
Downstream 100 bases:
>100_bases TCGTTCAATAAGACTGCATACATACAATGGCTGCCATGCTTTGCCACGGCAGCCCCTTTATGGCCAGTATAACTATCCTG GCCAGGGGGAGGAATGCGGC
Product: RNP-1 like RNA-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 90
Protein sequence:
>90_residues MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSDLNGRSIKVNQARPR EERPPRRDNY
Sequences:
>Translated_90_residues MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSDLNGRSIKVNQARPR EERPPRRDNY >Mature_90_residues MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSDLNGRSIKVNQARPR EERPPRRDNY
Specific function: Unknown
COG id: COG0724
COG function: function code R; RNA-binding proteins (RRM domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RRM (RNA recognition motif) domain [H]
Homologues:
Organism=Homo sapiens, GI4757926, Length=80, Percent_Identity=36.25, Blast_Score=69, Evalue=7e-13, Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=36.25, Blast_Score=69, Evalue=7e-13, Organism=Homo sapiens, GI4502847, Length=84, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=35.5263157894737, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=35.5263157894737, Blast_Score=67, Evalue=2e-12, Organism=Homo sapiens, GI45238849, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=5e-12, Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=6e-12, Organism=Homo sapiens, GI51243065, Length=91, Percent_Identity=36.2637362637363, Blast_Score=65, Evalue=2e-11, Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=2e-11, Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI188219593, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI188219591, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=33.75, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=37.037037037037, Blast_Score=64, Evalue=3e-11, Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=35.8974358974359, Blast_Score=64, Evalue=4e-11, Organism=Homo sapiens, GI5803137, Length=75, Percent_Identity=34.6666666666667, Blast_Score=62, Evalue=8e-11, Organism=Homo sapiens, GI185135971, Length=82, Percent_Identity=36.5853658536585, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=38.961038961039, Blast_Score=78, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=41.25, Blast_Score=78, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17539498, Length=92, Percent_Identity=39.1304347826087, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=35.5263157894737, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193209459, Length=87, Percent_Identity=35.632183908046, Blast_Score=65, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17537143, Length=77, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI32564506, Length=91, Percent_Identity=34.0659340659341, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32564504, Length=91, Percent_Identity=34.0659340659341, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17531963, Length=91, Percent_Identity=34.0659340659341, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17531965, Length=91, Percent_Identity=34.0659340659341, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71993203, Length=81, Percent_Identity=34.5679012345679, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71993209, Length=81, Percent_Identity=34.5679012345679, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71993217, Length=81, Percent_Identity=34.5679012345679, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17532167, Length=75, Percent_Identity=40, Blast_Score=62, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324312, Length=81, Percent_Identity=38.2716049382716, Blast_Score=71, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6321013, Length=82, Percent_Identity=35.3658536585366, Blast_Score=60, Evalue=6e-11, Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=41.25, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=41.25, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=41.25, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=41.25, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=41.25, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=41.25, Blast_Score=73, Evalue=3e-14, Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=34.2105263157895, Blast_Score=67, Evalue=1e-12, Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=39.7435897435897, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=38.2716049382716, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI24583879, Length=83, Percent_Identity=34.9397590361446, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24583875, Length=83, Percent_Identity=34.9397590361446, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI281364913, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=5e-11, Organism=Drosophila melanogaster, GI24583877, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=5e-11, Organism=Drosophila melanogaster, GI161078704, Length=84, Percent_Identity=34.5238095238095, Blast_Score=62, Evalue=5e-11, Organism=Drosophila melanogaster, GI24583873, Length=83, Percent_Identity=34.9397590361446, Blast_Score=62, Evalue=6e-11, Organism=Drosophila melanogaster, GI24649519, Length=85, Percent_Identity=36.4705882352941, Blast_Score=62, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012677 - InterPro: IPR000504 - InterPro: IPR015465 [H]
Pfam domain/function: PF00076 RRM_1 [H]
EC number: NA
Molecular weight: Translated: 10262; Mature: 10262
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS50102 RRM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAID CEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHH SLHDSDLNGRSIKVNQARPREERPPRRDNY HHCCCCCCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MNIYIGNLPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAID CEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCHHHHHHH SLHDSDLNGRSIKVNQARPREERPPRRDNY HHCCCCCCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]