| Definition | Chlorobium phaeobacteroides BS1 chromosome, complete genome. |
|---|---|
| Accession | NC_010831 |
| Length | 2,736,403 |
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The map label for this gene is ctpA [H]
Identifier: 189499021
GI number: 189499021
Start: 25214
End: 26905
Strand: Direct
Name: ctpA [H]
Synonym: Cphamn1_0021
Alternate gene names: 189499021
Gene position: 25214-26905 (Clockwise)
Preceding gene: 189499020
Following gene: 189499026
Centisome position: 0.92
GC content: 51.54
Gene sequence:
>1692_bases ATGAAACGTTATTCGACAAGCGGTATCGGCAGCATGGTGATGCGGGTTTTTGTTTCTCTTCTCTTCTTTTCGGGAACGTT TCTGAAAACGGCGGAAAGCCGTGAGAGCGACTCTTTTTACATCGCAAAAAACATTGAGCTGCTCGGTGAGGTTTACCGGA ACGTTTCTGAAAATTATGTTGATAGTATAGACACGGCGGAGTTCATGTATGCCGGTATAGATGGTATGCTTGAAACGCTT GATCCCTATACGGTTTTTCTTGACGAAAAAGAGTCGGATGAACTCGGAGAGCTGACAAGCGGGCACTATGCCGGCATCGG AGTCAGGATATCGGAAATTGCCGGGGAGGTCTATGTTCTTTCGGTTTTTGACGGGTCTCCGGCGGCAAAAGCCGGACTTC GTGTCGGCGATCGTATCGAGAAGGTTGACCGGCATATCGTTAAGGGAAAAGATCTTGATGAGGTGAAGACTTTCATCAAA GGGCCAGCCGGAAGCGAGGTCGTTCTCACTGTTGAAAGGTACGGGAAGAAGAGCAGGGTTCGGGCAAGGATTACCCGTCG CGAAGTCAGGGTTAACAGCATACGCTATTCGGGACTGCTTGGAGAGATCGGATATCTCGTGATGGACTCATTCGGGAACA GGAGTCCGGATGAGCTCAAGAGGGCGATCAATGAACTGGATGCCGCATCGAGAATCAGGAAACGCCCCATGGCCGGCGTG ATTCTGGATCTACGGAACAATCCGGGCGGGTTGCTTGAGGCCGCCGTTGATGTCAGCGGGCTTTTTGTCAGCAAGGGCAG TCAGGTCGTTTCAACCATGGGTCGTGATCCTGAAAGCAGAATCAGCTACGAGACAAAGCGTGCTCCTGTCGTCGAAAAGC GACCTCTGGCCATACTGATCAATAAAAACAGCGCGTCAGCCGCCGAGATTGTTGCAGGGGCAATCCAGGAGCTTGATCGT GGCGTGATTGTCGGAAACCGTTCGTTCGGCAAAGGGCTTGTTCAGTCAGTAATCACCCTTCCCTATGACTCCAAGCTGAA GATGACAACGTCCAAGTACTATACACCTTCCGGTCGTCTGATCCAGCAGGAGCATGACTGGACAGGGGGGCCCCGCAAGG TTCTTGAGCGCGAAGAAAAGCCGGCAGATGGTATGGTGTTTTATACCCGTAACAAGCGTAAGGTTTATGGAGGAGGAGGT ATTCTTCCCGACATCAGGCTTGACGGATATATTCCCGGCAGCTATGAAGCCGCTCTGCGCAAGGACGGAATGCTTTTCCG CTTCGCCAGTACATACAGGGCATCACATGATCGAATCCCGCAGGCCGGCATTGACAGAAAATCGTTGATGCGCGATTTTG CCGGTTTTCTCGAAAGGGAGTCGTTCATCTACAAATCCAAACCGGAGGAGCTTCTTGAGGAAGTCAGGAAATCCCTTGCC GGGAATCATAAAGAGGCTCATCCTGGGATCGATTCGCTCGTCGCATCTCTTGAAAAGGAGATGAAACTTCTTGCCGGTAA GCAGAAATCAAGCGAATCGAAACAGGTCGCTCTTGCTCTTGAGCAGGAAATCCTGCGTCATTACGATGAGGAGGCTGCTC TACGAAGCCGAATAGAGGACGATCCTGTCGTTAAAAAAGCGTTGGAAGTTCTGCAGGACCCGGGCAGGTACAGCACGTTG CTCAGCCCATAG
Upstream 100 bases:
>100_bases GTCAAGTACAGGGATGAAAAAACGGATAGTGTGACGGCGCTGGAAAGCGCGTTGCGATGATCACGCTCTCTTTTTCCCGG AACGAGCAAAGAAGACAGGC
Downstream 100 bases:
>100_bases GCGATGATGCTATCTGCCCCTTTTCAAAACGTTTAATCTGACGATGGATACCGATAATGATCATCATGTTGCTGATGGTC AGCAGGCTTTCCGCGCCGCC
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: C-terminal-processing protease [H]
Number of amino acids: Translated: 563; Mature: 563
Protein sequence:
>563_residues MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKNIELLGEVYRNVSENYVDSIDTAEFMYAGIDGMLETL DPYTVFLDEKESDELGELTSGHYAGIGVRISEIAGEVYVLSVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIK GPAGSEVVLTVERYGKKSRVRARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDELKRAINELDAASRIRKRPMAGV ILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRDPESRISYETKRAPVVEKRPLAILINKNSASAAEIVAGAIQELDR GVIVGNRSFGKGLVQSVITLPYDSKLKMTTSKYYTPSGRLIQQEHDWTGGPRKVLEREEKPADGMVFYTRNKRKVYGGGG ILPDIRLDGYIPGSYEAALRKDGMLFRFASTYRASHDRIPQAGIDRKSLMRDFAGFLERESFIYKSKPEELLEEVRKSLA GNHKEAHPGIDSLVASLEKEMKLLAGKQKSSESKQVALALEQEILRHYDEEAALRSRIEDDPVVKKALEVLQDPGRYSTL LSP
Sequences:
>Translated_563_residues MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKNIELLGEVYRNVSENYVDSIDTAEFMYAGIDGMLETL DPYTVFLDEKESDELGELTSGHYAGIGVRISEIAGEVYVLSVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIK GPAGSEVVLTVERYGKKSRVRARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDELKRAINELDAASRIRKRPMAGV ILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRDPESRISYETKRAPVVEKRPLAILINKNSASAAEIVAGAIQELDR GVIVGNRSFGKGLVQSVITLPYDSKLKMTTSKYYTPSGRLIQQEHDWTGGPRKVLEREEKPADGMVFYTRNKRKVYGGGG ILPDIRLDGYIPGSYEAALRKDGMLFRFASTYRASHDRIPQAGIDRKSLMRDFAGFLERESFIYKSKPEELLEEVRKSLA GNHKEAHPGIDSLVASLEKEMKLLAGKQKSSESKQVALALEQEILRHYDEEAALRSRIEDDPVVKKALEVLQDPGRYSTL LSP >Mature_563_residues MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKNIELLGEVYRNVSENYVDSIDTAEFMYAGIDGMLETL DPYTVFLDEKESDELGELTSGHYAGIGVRISEIAGEVYVLSVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIK GPAGSEVVLTVERYGKKSRVRARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDELKRAINELDAASRIRKRPMAGV ILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRDPESRISYETKRAPVVEKRPLAILINKNSASAAEIVAGAIQELDR GVIVGNRSFGKGLVQSVITLPYDSKLKMTTSKYYTPSGRLIQQEHDWTGGPRKVLEREEKPADGMVFYTRNKRKVYGGGG ILPDIRLDGYIPGSYEAALRKDGMLFRFASTYRASHDRIPQAGIDRKSLMRDFAGFLERESFIYKSKPEELLEEVRKSLA GNHKEAHPGIDSLVASLEKEMKLLAGKQKSSESKQVALALEQEILRHYDEEAALRSRIEDDPVVKKALEVLQDPGRYSTL LSP
Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=344, Percent_Identity=31.3953488372093, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 62534; Mature: 62534
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKNIELLGEVYRNVSENYV CCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH DSIDTAEFMYAGIDGMLETLDPYTVFLDEKESDELGELTSGHYAGIGVRISEIAGEVYVL HCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCEECEEHHHCCCCEEEE SVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIKGPAGSEVVLTVERYGKKSRV EEECCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHHCCCHHHH RARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDELKRAINELDAASRIRKRPMAGV HHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE ILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRDPESRISYETKRAPVVEKRPLAILI EEEECCCCCCHHHHHHHHHHEEECCCHHHHHHHCCCHHHHCCCHHHCCCCCCCCCEEEEE NKNSASAAEIVAGAIQELDRGVIVGNRSFGKGLVQSVITLPYDSKLKMTTSKYYTPSGRL ECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCEECCCCCE IQQEHDWTGGPRKVLEREEKPADGMVFYTRNKRKVYGGGGILPDIRLDGYIPGSYEAALR EEECCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCCEECCCCCCCHHHHHH KDGMLFRFASTYRASHDRIPQAGIDRKSLMRDFAGFLERESFIYKSKPEELLEEVRKSLA CCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC GNHKEAHPGIDSLVASLEKEMKLLAGKQKSSESKQVALALEQEILRHYDEEAALRSRIED CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCC DPVVKKALEVLQDPGRYSTLLSP CHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKRYSTSGIGSMVMRVFVSLLFFSGTFLKTAESRESDSFYIAKNIELLGEVYRNVSENYV CCCCCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH DSIDTAEFMYAGIDGMLETLDPYTVFLDEKESDELGELTSGHYAGIGVRISEIAGEVYVL HCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCEECEEHHHCCCCEEEE SVFDGSPAAKAGLRVGDRIEKVDRHIVKGKDLDEVKTFIKGPAGSEVVLTVERYGKKSRV EEECCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEEEEHHHCCCHHHH RARITRREVRVNSIRYSGLLGEIGYLVMDSFGNRSPDELKRAINELDAASRIRKRPMAGV HHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE ILDLRNNPGGLLEAAVDVSGLFVSKGSQVVSTMGRDPESRISYETKRAPVVEKRPLAILI EEEECCCCCCHHHHHHHHHHEEECCCHHHHHHHCCCHHHHCCCHHHCCCCCCCCCEEEEE NKNSASAAEIVAGAIQELDRGVIVGNRSFGKGLVQSVITLPYDSKLKMTTSKYYTPSGRL ECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEECCEECCCCCE IQQEHDWTGGPRKVLEREEKPADGMVFYTRNKRKVYGGGGILPDIRLDGYIPGSYEAALR EEECCCCCCCHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCCEECCCCCCCHHHHHH KDGMLFRFASTYRASHDRIPQAGIDRKSLMRDFAGFLERESFIYKSKPEELLEEVRKSLA CCCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC GNHKEAHPGIDSLVASLEKEMKLLAGKQKSSESKQVALALEQEILRHYDEEAALRSRIED CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCC DPVVKKALEVLQDPGRYSTLLSP CHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141685 [H]