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The map label for this gene is secF [H]

Identifier: 189499012

GI number: 189499012

Start: 15927

End: 16853

Strand: Direct

Name: secF [H]

Synonym: Cphamn1_0012

Alternate gene names: 189499012

Gene position: 15927-16853 (Clockwise)

Preceding gene: 189499011

Following gene: 189499013

Centisome position: 0.58

GC content: 46.71

Gene sequence:

>927_bases
ATGCAATTGATACATAAAACGAACGTAGACTTTCTTAAGAACAGGAAGATAGCCTATGTCATTTCTTTAACCCTGATGCT
TGCCGGAGTGCTGTCCTTGTTTGTAAAAGGATTGAATTTCGGTATCGACTTCAAGGGAGGGACGGAGGTTGTGCTTCGCT
TTGAAGAAGAGGTGACTGTCGGCGAAGTGCGGTCGGTGCTCAAGGAAGCGGGAGTGGAAGGAGCGGTGAAGCGATACGGG
GCTGATCGCTCTATTCTTCTGCAGACCGCTTTCGAGGGTAATCTTAACGATTTGAAGTCGCTGGTGAACAATGCGCTTGA
TGACAGGATTGCAGATAATCCTCATGAGGTTTTGCGGATTGATTCCGTTGGTCCCAGTATTGCATCCGATCTGAAATGGG
CAGCCCTGAAAGCGCTTCTCGGTGCTGTGATAGCGATTCTGATATACGTAGGAATCCGCTTTGAGTTCAGCTTTGCTGTG
GCGAGTGTTATGGCCATATTTCACGATGTGTTTATCGTTCTCGGTTTATTCAGCATTTTCGGAGGTCTCTTTGATTATAT
GCCTCTGGTTATCGATCAGGGTGTTATTGCCGCTTTTCTGACTATAGCAGGCTACTCCATCAACGATACAGTCGTTATCT
ATGACAGGATTCGTGAAAATATCCGTTCAGGAAAATCCTCCGAGTATACCTCCACTTTCAACCGCAGTCTCAATGAGACG
TTGAGCAGGACGGTTATTACTTCAGGAACCACTCTTGTTGTCGTTCTTGTTCTGTTTTTCTTTGCAGGCCCTGCTATTCG
GGGATTTACCTTCGCGATACTTCTCGGTATCGTAATCGGTACCTACTCTTCATTGTTTATCGCGGCTCCTCTTGTTCTCG
ACTGGCAGAAGAAAACCAGACGTCCGATTAAACTCAGGGGGGGATAG

Upstream 100 bases:

>100_bases
CCGCTCTGGTGGTTACCAAGGTTATTTTTGATCTGCTGATTGATCGAAATCTCATGACAGCAAAGAGTTTCGGATAAAAT
ATCATTAAGGAATATTCAGT

Downstream 100 bases:

>100_bases
CGGCATGAAGCAGCTTTCCTTTCTTGTTGTGGTGACGCTTATTCTTTCCGGCTGCGGAAATCAACATGACGATGTTGTAG
CCAAATCCGGAGATCTTCAG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTVGEVRSVLKEAGVEGAVKRYG
ADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEVLRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAV
ASVMAIFHDVFIVLGLFSIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSGKSSEYTSTFNRSLNET
LSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQKKTRRPIKLRGG

Sequences:

>Translated_308_residues
MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTVGEVRSVLKEAGVEGAVKRYG
ADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEVLRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAV
ASVMAIFHDVFIVLGLFSIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSGKSSEYTSTFNRSLNET
LSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQKKTRRPIKLRGG
>Mature_308_residues
MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTVGEVRSVLKEAGVEGAVKRYG
ADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEVLRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAV
ASVMAIFHDVFIVLGLFSIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSGKSSEYTSTFNRSLNET
LSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQKKTRRPIKLRGG

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=310, Percent_Identity=37.0967741935484, Blast_Score=198, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33751; Mature: 33751

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50156 SSD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTV
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCH
GEVRSVLKEAGVEGAVKRYGADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEVLRI
HHHHHHHHHHCCHHHHHHHCCCHHEEEHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEE
DSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAVASVMAIFHDVFIVLGLFSIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSGKSSEYTSTFNRSLNET
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
LSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQKKTR
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCC
RPIKLRGG
CCEEECCC
>Mature Secondary Structure
MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTV
CCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEECCCCCH
GEVRSVLKEAGVEGAVKRYGADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEVLRI
HHHHHHHHHHCCHHHHHHHCCCHHEEEHHHCCCCHHHHHHHHHHHHHHHCCCCHHHEEEE
DSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAVASVMAIFHDVFIVLGLFSIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSGKSSEYTSTFNRSLNET
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
LSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQKKTR
HHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCC
RPIKLRGG
CCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]