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The map label for this gene is secD [H]

Identifier: 189499011

GI number: 189499011

Start: 14086

End: 15903

Strand: Direct

Name: secD [H]

Synonym: Cphamn1_0011

Alternate gene names: 189499011

Gene position: 14086-15903 (Clockwise)

Preceding gene: 189499010

Following gene: 189499012

Centisome position: 0.51

GC content: 50.44

Gene sequence:

>1818_bases
ATGAAAAACAACCGGTTTAAAAGTATCCTTATTGTCGCCTTGACGGCGCTTGCGCTCTGGTCGTTGTGGCCAACGTATCA
GGATTATTCCTATTCAAAGCAGCTCGATCGGCAGGAGACTGCCGAAGACAGCCTTTCCTTTGTTCGAGACCATCGTGAGT
CGATTGAAGCCGCGGCTGAAAAAAGTCTGAAACTCGGACTGGACCTGAGGGGAGGCATGTATCTTGTCCTTGAAGTTGAT
CTTATCGATCTTATTGAAGAGAAGGCATGGAACAAAGATGATACCTTCCGCCGGATCATTGCCGATGTCAGGAGCAAAAC
CGCCGGCAGCAACGCTCAGGTGATCGAGGTGCTGGTTTCTGAATTTCAGAAGCGCAGCATAAGGATGAGCCGTTACTTTT
ATGAGGTGCGGGACAGTGACGAGGAAATAATCGTCAAGCTCAGAAAAGAGGCGCAGGACGCCGTCGTCAGAGCAAAGGAG
ATTATCCGGAACCGGGTTGACCAGTATGGCGTTGCCGAGCCGGTGATTCAGAGCCAGGGAGCAAGACGTATCATTGTCGC
CCTTCCCGGTGTTTCCGACGAAGACAGGGTTCGCAAACTGCTTCGTGGGTCTGCGAAACTGGAATTCAAGCTTGTCAAAG
ATAATGAAAGTCTGCTCGAAGCTCTCGAGCGGATTAACAGTTCACTGGCTGAGAACGAGGTGTCGAAAGAGAATCCGGAC
CTTCCTGAAGGAGATGGCGCGGAAGGAGAGACCGTAGCCGAGAAGTCGAGCAATCCTCTGTATGATAACATCGTTGTTCT
TGAAAACGGAAGAGTCTATGCTCCGGACTATTCGAGAGAGTACCTGACCGGTCTCTTTCAACGTGAAAGTATTCAAAAGC
TGCTCCCGAAAGATTCGGAAATCCGTCTGTCGGCAAGGTCGATCGAGGGGAGTGACGGTGCTATGTTTTACGATGTCTAT
CTGCTGAAGAAAACTCCTGAGCTTACCGGAGGGGTTATTACTGAAGCTAAGGCAACCTTTGGCGCTTCAGCCGTTCAGCC
GGAAGTCACCATGAAAATGAATTCTGACGGTACGGCTAAATGGGCGAGAATCACCGGTGCGAATATCGGCCGCAGGATTG
CTATCGTTCTGGACGGCGCAGTGTATTCTGCGCCTGTGGTTGAGTCAAAAATTCCCGGCGGGAGTTCCGTGATCAACGGT
ATTGATGGTATCGAAGAGGCTCAGGATCTTGAGATCGTGCTGAAAGCAGGCGCGTTACCTGCGCCCGTAAGAATTATTGA
AGAACGGACAGTCGGTCCGACGCTTGGTGCTGATTATATCCGTTCGGGCCTGCTTTCAGCAGCCTGGGGCCTGTTTCTTG
TCGCCGTATTCATGGTGTTCTACTACCGTAAGGCAGGATTTTCCACAGACATCGCGCTTGTCCTGAATATTCTTTTTGTG
CTCTCTGTGCTCGCCGGATTCAGTGCGGCACTCAGTCTGCCGGGTATTGCCGGTATCGTGCTGACCATCGGTATGGCTGT
AGATGCAAATGTGCTTATTTTTGAACGGATCAGGGAGGAGATCGCTCAGGGAAAAAACATGCGTCTTGCGGTTGATACCG
GATACAGCAAGGCATTTTCTGCTATTGTTGACTCTCAGATTACAACACTTGGCGCCGGATTCCTGCTCTATATCTATGGC
ATTGGGCCGATCCAGGGATTTGCGCTCACGCTCATGATAGGTATTGCGGCCAGTCTTTTCACCGCTCTGGTGGTTACCAA
GGTTATTTTTGATCTGCTGATTGATCGAAATCTCATGACAGCAAAGAGTTTCGGATAA

Upstream 100 bases:

>100_bases
AGTACGCAACTTCCTCTGATTGTTAATCAGGTGCTGGTTTTATATATTGGCTGATCTTGATTTATTGACCGCGTACTATT
CGCAAAGCTATCATGCATGT

Downstream 100 bases:

>100_bases
AATATCATTAAGGAATATTCAGTATGCAATTGATACATAAAACGAACGTAGACTTTCTTAAGAACAGGAAGATAGCCTAT
GTCATTTCTTTAACCCTGAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAEKSLKLGLDLRGGMYLVLEVD
LIDLIEEKAWNKDDTFRRIIADVRSKTAGSNAQVIEVLVSEFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKE
IIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESLLEALERINSSLAENEVSKENPD
LPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPDYSREYLTGLFQRESIQKLLPKDSEIRLSARSIEGSDGAMFYDVY
LLKKTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAKWARITGANIGRRIAIVLDGAVYSAPVVESKIPGGSSVING
IDGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFV
LSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYG
IGPIQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMTAKSFG

Sequences:

>Translated_605_residues
MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAEKSLKLGLDLRGGMYLVLEVD
LIDLIEEKAWNKDDTFRRIIADVRSKTAGSNAQVIEVLVSEFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKE
IIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESLLEALERINSSLAENEVSKENPD
LPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPDYSREYLTGLFQRESIQKLLPKDSEIRLSARSIEGSDGAMFYDVY
LLKKTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAKWARITGANIGRRIAIVLDGAVYSAPVVESKIPGGSSVING
IDGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFV
LSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYG
IGPIQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMTAKSFG
>Mature_605_residues
MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAEKSLKLGLDLRGGMYLVLEVD
LIDLIEEKAWNKDDTFRRIIADVRSKTAGSNAQVIEVLVSEFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKE
IIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESLLEALERINSSLAENEVSKENPD
LPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPDYSREYLTGLFQRESIQKLLPKDSEIRLSARSIEGSDGAMFYDVY
LLKKTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAKWARITGANIGRRIAIVLDGAVYSAPVVESKIPGGSSVING
IDGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFV
LSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYG
IGPIQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMTAKSFG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=319, Percent_Identity=38.5579937304075, Blast_Score=199, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66408; Mature: 66408

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLKLGLDLRGGMYLVLEVDLIDLIEEKAWNKDDTFRRIIADVRSKTAGSNAQVIEVLVS
HHHEECEEECCCEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
EFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKEIIRNRVDQYGVAEPVIQSQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
ARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESLLEALERINSSLAENEVSKENPD
CCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
LPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPDYSREYLTGLFQRESIQKLLPKDSE
CCCCCCCCCCHHHHCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
IRLSARSIEGSDGAMFYDVYLLKKTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAK
EEEEEECCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCE
WARITGANIGRRIAIVLDGAVYSAPVVESKIPGGSSVINGIDGIEEAQDLEIVLKAGALP
EEEEECCCCCCEEEEEECCCHHCCCCHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCC
APVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFS
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
AIVDSQITTLGAGFLLYIYGIGPIQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMT
HHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AKSFG
HCCCC
>Mature Secondary Structure
MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLKLGLDLRGGMYLVLEVDLIDLIEEKAWNKDDTFRRIIADVRSKTAGSNAQVIEVLVS
HHHEECEEECCCEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
EFQKRSIRMSRYFYEVRDSDEEIIVKLRKEAQDAVVRAKEIIRNRVDQYGVAEPVIQSQG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCC
ARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNESLLEALERINSSLAENEVSKENPD
CCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
LPEGDGAEGETVAEKSSNPLYDNIVVLENGRVYAPDYSREYLTGLFQRESIQKLLPKDSE
CCCCCCCCCCHHHHCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCC
IRLSARSIEGSDGAMFYDVYLLKKTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAK
EEEEEECCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCEEEEECCCCCCE
WARITGANIGRRIAIVLDGAVYSAPVVESKIPGGSSVINGIDGIEEAQDLEIVLKAGALP
EEEEECCCCCCEEEEEECCCHHCCCCHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCCC
APVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFV
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFS
HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
AIVDSQITTLGAGFLLYIYGIGPIQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMT
HHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AKSFG
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA