Click here to switch to the map view.

The map label for this gene is yphA [H]

Identifier: 189353864

GI number: 189353864

Start: 2170684

End: 2171121

Strand: Reverse

Name: yphA [H]

Synonym: BMULJ_05116

Alternate gene names: 189353864

Gene position: 2171121-2170684 (Counterclockwise)

Preceding gene: 189353865

Following gene: 189353860

Centisome position: 87.79

GC content: 64.61

Gene sequence:

>438_bases
ATGACGCGTTCCGTCGATTCCGGCGTCATTTTTTTCGCACGCCTGGCGCTGGCGGCGTTGTTTCTGTGGGGCGGCGTGAT
TAAGCTGCTTGGTTACGGCGATTTCGTCGGCTATCTGCGCGGACTGAACGTGCCGTATCCGCAGTTCGTCGCGCCGATCG
TCGTCGCGATCGAAGCGCTCGGCGGCCTGCTGCTGATCGTCGGCTACCGCGTGAAGCCGCTCGCGCTGCTGATGGCGATC
TACACCGTCGCGACCGCAATGGTCGGCCACAACTTCTGGGACGCGACCGATGCGGCGGTTCAGCACGACATGGTGATCCA
CTTCTGGAAAAACATCGCGATCGCGGGCGGCTTCCTGCTGCTGTTCGTGACGGGGGCGGGCGGCGCGAGCATCGACGGTT
TGCGACGGCCGAGCTCGTCGTACGGCGGGCTGCGCTGA

Upstream 100 bases:

>100_bases
GCTCTATGCTGGCCCATTTGCCGCGCGCGCCGCAGCGCGCGGTGCCGAGCGGCCTGGCCGCGCTCGCGCGACCGGACGTA
CTGCATACGAGGAGAGAGGC

Downstream 100 bases:

>100_bases
TCCGCTCGTGCGGCGCGCCGGGTGCCGCGCTGCGTGCCGTACCACCGCGCCGCTGCACCACCGCGCGGGCGCAAAAACGA
AAGGGCCGAATTCCGCCGCC

Product: DoxX family membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MTRSVDSGVIFFARLALAALFLWGGVIKLLGYGDFVGYLRGLNVPYPQFVAPIVVAIEALGGLLLIVGYRVKPLALLMAI
YTVATAMVGHNFWDATDAAVQHDMVIHFWKNIAIAGGFLLLFVTGAGGASIDGLRRPSSSYGGLR

Sequences:

>Translated_145_residues
MTRSVDSGVIFFARLALAALFLWGGVIKLLGYGDFVGYLRGLNVPYPQFVAPIVVAIEALGGLLLIVGYRVKPLALLMAI
YTVATAMVGHNFWDATDAAVQHDMVIHFWKNIAIAGGFLLLFVTGAGGASIDGLRRPSSSYGGLR
>Mature_144_residues
TRSVDSGVIFFARLALAALFLWGGVIKLLGYGDFVGYLRGLNVPYPQFVAPIVVAIEALGGLLLIVGYRVKPLALLMAIY
TVATAMVGHNFWDATDAAVQHDMVIHFWKNIAIAGGFLLLFVTGAGGASIDGLRRPSSSYGGLR

Specific function: Unknown

COG id: COG2259

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the doxX family [H]

Homologues:

Organism=Escherichia coli, GI145693171, Length=124, Percent_Identity=41.1290322580645, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87082210, Length=135, Percent_Identity=36.2962962962963, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011637 [H]

Pfam domain/function: PF07681 DoxX [H]

EC number: NA

Molecular weight: Translated: 15472; Mature: 15340

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSVDSGVIFFARLALAALFLWGGVIKLLGYGDFVGYLRGLNVPYPQFVAPIVVAIEAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GGLLLIVGYRVKPLALLMAIYTVATAMVGHNFWDATDAAVQHDMVIHFWKNIAIAGGFLL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVTGAGGASIDGLRRPSSSYGGLR
EEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRSVDSGVIFFARLALAALFLWGGVIKLLGYGDFVGYLRGLNVPYPQFVAPIVVAIEAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GGLLLIVGYRVKPLALLMAIYTVATAMVGHNFWDATDAAVQHDMVIHFWKNIAIAGGFLL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVTGAGGASIDGLRRPSSSYGGLR
EEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]