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The map label for this gene is ramA [H]

Identifier: 189352639

GI number: 189352639

Start: 726760

End: 727716

Strand: Reverse

Name: ramA [H]

Synonym: BMULJ_03870

Alternate gene names: 189352639

Gene position: 727716-726760 (Counterclockwise)

Preceding gene: 189352645

Following gene: 189352631

Centisome position: 29.42

GC content: 70.74

Gene sequence:

>957_bases
ATGAAACCGCAATACGAACACGTGACGTTCGCCCCCGGCTGTTCGATCCGCGTGTATCACCGGCAGCTCGCGCGTATCCC
GTTCGAGTGGCACCGCCATCCCGAATACGAGCTGACGCTTACGCTGAACAGCCGCGGCCGGCGCTTCATCGGCGATCACG
TCGCGCGCTATGCGGACGAGGATCTCGTCCTCGTGCCGCCGAATCTTCCGCATACCTGGTCGTCGAACGCGCGCATCGAC
CCGGATGCGCCCGAAGTCGCGCTCGTCGTCTGGTTCGACGGCGACTGGGTACGCCGCCTCGCGGACTGCTGCGCCGAATA
CGTACCGCTGCGCTCGCTGCTGCGGCGCGCGGCGCCGGGCCTGCGCTTCGATACGGAGACCGCGCGCGCGATGCGCGCGA
GGCTGCCGCGACTGCTCGATCCGTCGCCGCGCGTGCGCCTCGCCGCGGCGCTCGATACGCTGGCCGATCTCGCCGAAGCC
GGCGGCGAACCGCTCGCGACCGCGCAGGCCTACGAGCGGCACGACGGCGACGCGGACGCGCCCGAAGCCGAACGCCTCGA
CCGCGTGCTCGATGCGATCGACCGCCATTTTCACGAACCGCTGCGCATCGGCGCGCTCGCCGCGGTCGCGCATCTGTCCG
AACGCACGCTGCAGCGGATGTTCGTCCGCCATCTCGGCGAAAGCGTCGGCCGCTACGTGCAGCGCTTGCGCATCGCGCAC
GCGTGCCGCCATCTCGTCGCGACCGACTGGCCGATCGCGACGGTCGCCGCGCGCTGCGGGATTCCGAATCCAGCGAACTT
CAATCGCCAGTTTCTCGCGGCACGCGGCATGACACCGGGCGCGTACCGGCAGTGCTTCGCGCAACGCGGCCGCGCGCCCG
ACACCGACGCCGACGCACCGCCGCTCGACACGCGCCCGCCGTCGCTCGAGCGGCGCAAACGCACGCCGCGCAAATGA

Upstream 100 bases:

>100_bases
CTGACGCCTACGCAAACATGTGAAAACATGGCTTCGCTCCGTCGTGACGATCGATCCGATCATGCCACGACGCCGCGACC
GCCCTCGCCCGGAGCCCGCG

Downstream 100 bases:

>100_bases
AAACACCCCGGCGGGATGACCCACCGGGGTGCGGCATGCGGCGAACGCGAGCGGCCTGCCGGCCGGCTCGCGTCGTGCAC
GGCTTAACGTGCGTTCAGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKPQYEHVTFAPGCSIRVYHRQLARIPFEWHRHPEYELTLTLNSRGRRFIGDHVARYADEDLVLVPPNLPHTWSSNARID
PDAPEVALVVWFDGDWVRRLADCCAEYVPLRSLLRRAAPGLRFDTETARAMRARLPRLLDPSPRVRLAAALDTLADLAEA
GGEPLATAQAYERHDGDADAPEAERLDRVLDAIDRHFHEPLRIGALAAVAHLSERTLQRMFVRHLGESVGRYVQRLRIAH
ACRHLVATDWPIATVAARCGIPNPANFNRQFLAARGMTPGAYRQCFAQRGRAPDTDADAPPLDTRPPSLERRKRTPRK

Sequences:

>Translated_318_residues
MKPQYEHVTFAPGCSIRVYHRQLARIPFEWHRHPEYELTLTLNSRGRRFIGDHVARYADEDLVLVPPNLPHTWSSNARID
PDAPEVALVVWFDGDWVRRLADCCAEYVPLRSLLRRAAPGLRFDTETARAMRARLPRLLDPSPRVRLAAALDTLADLAEA
GGEPLATAQAYERHDGDADAPEAERLDRVLDAIDRHFHEPLRIGALAAVAHLSERTLQRMFVRHLGESVGRYVQRLRIAH
ACRHLVATDWPIATVAARCGIPNPANFNRQFLAARGMTPGAYRQCFAQRGRAPDTDADAPPLDTRPPSLERRKRTPRK
>Mature_318_residues
MKPQYEHVTFAPGCSIRVYHRQLARIPFEWHRHPEYELTLTLNSRGRRFIGDHVARYADEDLVLVPPNLPHTWSSNARID
PDAPEVALVVWFDGDWVRRLADCCAEYVPLRSLLRRAAPGLRFDTETARAMRARLPRLLDPSPRVRLAAALDTLADLAEA
GGEPLATAQAYERHDGDADAPEAERLDRVLDAIDRHFHEPLRIGALAAVAHLSERTLQRMFVRHLGESVGRYVQRLRIAH
ACRHLVATDWPIATVAARCGIPNPANFNRQFLAARGMTPGAYRQCFAQRGRAPDTDADAPPLDTRPPSLERRKRTPRK

Specific function: Probable transcriptional activator [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35975; Mature: 35975

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPQYEHVTFAPGCSIRVYHRQLARIPFEWHRHPEYELTLTLNSRGRRFIGDHVARYADE
CCCCCCCEEECCCCCCHHHHHHHHHCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC
DLVLVPPNLPHTWSSNARIDPDAPEVALVVWFDGDWVRRLADCCAEYVPLRSLLRRAAPG
CEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
LRFDTETARAMRARLPRLLDPSPRVRLAAALDTLADLAEAGGEPLATAQAYERHDGDADA
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
PEAERLDRVLDAIDRHFHEPLRIGALAAVAHLSERTLQRMFVRHLGESVGRYVQRLRIAH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACRHLVATDWPIATVAARCGIPNPANFNRQFLAARGMTPGAYRQCFAQRGRAPDTDADAP
HHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCC
PLDTRPPSLERRKRTPRK
CCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MKPQYEHVTFAPGCSIRVYHRQLARIPFEWHRHPEYELTLTLNSRGRRFIGDHVARYADE
CCCCCCCEEECCCCCCHHHHHHHHHCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCC
DLVLVPPNLPHTWSSNARIDPDAPEVALVVWFDGDWVRRLADCCAEYVPLRSLLRRAAPG
CEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
LRFDTETARAMRARLPRLLDPSPRVRLAAALDTLADLAEAGGEPLATAQAYERHDGDADA
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCC
PEAERLDRVLDAIDRHFHEPLRIGALAAVAHLSERTLQRMFVRHLGESVGRYVQRLRIAH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACRHLVATDWPIATVAARCGIPNPANFNRQFLAARGMTPGAYRQCFAQRGRAPDTDADAP
HHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCC
PLDTRPPSLERRKRTPRK
CCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2193928; 7551053 [H]