Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
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Accession | NC_010793 |
Length | 2,008,987 |
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The map label for this gene is 189184741
Identifier: 189184741
GI number: 189184741
Start: 1866236
End: 1868908
Strand: Reverse
Name: 189184741
Synonym: OTT_1834
Alternate gene names: NA
Gene position: 1868908-1866236 (Counterclockwise)
Preceding gene: 189184742
Following gene: 189184740
Centisome position: 93.03
GC content: 33.3
Gene sequence:
>2673_bases ATGACTGACAAAATCAATGATTCAAATAATTTCAATAACATTCATAATTCAAAAACAGATATAGAAAATTCTAAAGCTAA CAGCTTGAACCACAACGTGGCTGTAAAGTTGATAAATGGTGATATTGTTGATGGTATAGTGCTACTTAGTGATAATAATA GCTTGAGAGCTGATAACACTCTGAAAGAATCAATAAACCAATTAATCAATGATTGGAAAAATAGTAAATTTGAGCCGCAG GATCGTTTGATAATTGCTGGCCATAAGGAAGCTGAAAATATTAATCAAAACATCAGAAATTACATGAAGGAAAATGGTGC TCTGAAAGGTCCAGAATACAGCATTTTAATTTCAGGAGCCGAATCAAAAAAATATGCTAACTACATGGCTGGAGATAGAA TTGTCTTTCAGGCAAGCAATAAGGATTTACAAATACAAAACAGTGAATTTGCAACGCTAGTATCAATTGATGAAAATAAG TTTGTAGCTAAGACAGATACAGGAAACGAGGTAAGCTTTGATTTGAATAAAATAAGCTTTAAACATGGATATGCTACGAC AATTTGTAACCCACAAACAGCTTTCAAAAAAGATGTATATGTTCTTCATAATGATGGTGTAGGTATAGAAAGTTCTAACA TAAGCATGATAGGGAATGCAGAGCAAGTACGGTTGTACTACAACATGCAAGCTACAAAAAATGTTGCTAACCTGATAGAG CAGCTTAGCACAGCTAAGGCAAACTCTATGAATTCAAAAGTTGTAGAGGAAAATAATAATGTTCAAGCAAATGAAGTAAG GCAATATCAATCGGCTCAAAACTATAGACAAAACGATTATTATTCAAATAGCCAGGAAGAACTACGAGAATTGAAGGATC AAATAGCTAGTAGAGCTGAAACTATAGCTTGTGAGCTTCTTGGAAAGCCAAATGAGCACCTATCTAAAAACGAAAGGATG CGTTGGGGAAACCATGGCAAAATAGTAGTAAACATTAGTGGCAATCGTGCTGGAAAATGGTATGATTTTAGCGCAGGAGA AGGTGGTGATTTATTCTCCCTGGTTCAAAGAGAAAGAGGATACAGCTTTTTTGACGCAAAGGAATATTTGAAAAGCGTCG TTGGAATGTCTAATATTAGCCAACGGTATCAGAGACAGCCTAGGACTAACGATTCTCAACAATACATTCAACAACCTGAA AGTATTAAAATTGCAAATGTTCAAAACTTGTATGAACGATCAAGCAAGATACATGGTTATGAGATAGATAAGAACCCACA TGCAGAAGTAGTAAACAAGTATCTTGAAAATCGTGGTATTACTTTTGACAAAAGCACTGCAAGTTCAGACTTAAAAGCAA GTATACTGTTTGATACTCAAACGAGAGAAAATTATCCAGCATTTACAGCTTTTGCAAGAAATGCAAAAGGAGAAATTACC GGAGTACAGGCTGTATATCTAAATCCAGAAACAGGATATAAGGCAGATGTTTCAATTAACAGAAGATCTTTCGGTAAAAT CAGCGGATCGTTCATAACAATAGCAAAACGAAATGTGAATGACCCTAATATAACAATTATAGCAGAAGGCGCTGAAACAG CGTTGAGCTTACAGCAAGCGGGCATTAAAGGCAATATCATTGCTAGTGCTGGAATTTCGAATTTGACAAATTATTCACCA TTCCCAGGTGAAAAAATCATCATTGCAGCAGATAATGATGGAAAAAATTCTCTAACTAATAATACTGTAATCAAATTTGC AAAAATATTAGAAATGAAGGAAGCGATAACTTGTATAGTCAAACCACAAGAAAATGGTGATTTTAATAATCTGCTGCAAA CTTGTGGAGCTCAGTCAATTAGAGACATTATAGAACCTGAAATTACTAAACTGACTAAAGCAGTTGAAGCAACCAAACTT ACTCAAACAGAAAATAATAGTATAGAAAAACAAAATGATATTACGAATGTTAAAGAATTGTATAATAAATCTTCATCTCT ATACTATTTAAAACAAGAAGAGGAGGCAAAACTGGAAGCGATAGTAGCGAATAAATATCTAGAAAACCATACAGAAATTT ATAGTTCAAAAATCTTTGATAATCCTAATTTAAGATCAAATATGGTTTTTGATGAAAAAACTCAAAAATCCTGGCCTGCA CTTACTGTTTTTGTTAAAAATGAAAAAGGCGAAATTACTGGAGCTAAGATATTAGCCTTGAATTCAAAAACATGTAATAA AGCGGATGTAGCTGAAAAATCTGTTGGTACAATTAGTGGATCATTTGCTGAAATTGCTCAACAAAATTCAAAATACTCAC CTGTAACAATCATTACAAAGGATATTGAAACAGCGTTAACCATTCGGCAAGCTGGAGTCGAAGGAAAAATCTTATGTGCA ATTGAAGCCGAAAATTTGCAAAACTATAATCCTGGCTCAAAAGAAAAGATCATTCTAGCAGTTAAAAATGACGTAAATAC TGAAAAAGCAGAAAAAGTTTTGGAGGATAAAGGAGCAATAGTCTGCACAGTCAAAAATGACTTCAATAATGTATTAAAAA CTCAAGGGTTATATGCTGTTAGAAATATTATCAGCCCTGAAATAAGAAAACTTACTGAAAAAAATGAATCAATACAAACT AACATACAACCAAGATTATGTCTGAAAATTTAA
Upstream 100 bases:
>100_bases ATCTCAATAATCACTTAGCAATAAAATTATAATTCAAACGGTAAAAATATCAAATATTTATACCGCAAAACAATTTAGTG ACGCGAAGGTGAGGTTTTAT
Downstream 100 bases:
>100_bases AACACGATGGGCTATTTAAAGATTTAATGAATGATCCAAAAGCAGCTCTGGATTTCATAAATGACTTTTTACCAAATGAA GTTAAAAACGTACTAGATTT
Product: putative conjugative transfer protein TraI
Products: NA
Alternate protein names: Conjugative Transfer Protein TraA; Conjugal Transfer Protein TraA; Conjugal Transfer Relaxase TraA; Conjugal Transfer Protein; MobA/MobL Family Protein; MobA/MobL Protein; Conjugative Transfer Relaxase Protein TraI; Protein TraI; DNA Helicase
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MTDKINDSNNFNNIHNSKTDIENSKANSLNHNVAVKLINGDIVDGIVLLSDNNSLRADNTLKESINQLINDWKNSKFEPQ DRLIIAGHKEAENINQNIRNYMKENGALKGPEYSILISGAESKKYANYMAGDRIVFQASNKDLQIQNSEFATLVSIDENK FVAKTDTGNEVSFDLNKISFKHGYATTICNPQTAFKKDVYVLHNDGVGIESSNISMIGNAEQVRLYYNMQATKNVANLIE QLSTAKANSMNSKVVEENNNVQANEVRQYQSAQNYRQNDYYSNSQEELRELKDQIASRAETIACELLGKPNEHLSKNERM RWGNHGKIVVNISGNRAGKWYDFSAGEGGDLFSLVQRERGYSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQYIQQPE SIKIANVQNLYERSSKIHGYEIDKNPHAEVVNKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEIT GVQAVYLNPETGYKADVSINRRSFGKISGSFITIAKRNVNDPNITIIAEGAETALSLQQAGIKGNIIASAGISNLTNYSP FPGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIVKPQENGDFNNLLQTCGAQSIRDIIEPEITKLTKAVEATKL TQTENNSIEKQNDITNVKELYNKSSSLYYLKQEEEAKLEAIVANKYLENHTEIYSSKIFDNPNLRSNMVFDEKTQKSWPA LTVFVKNEKGEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCA IEAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKGAIVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLTEKNESIQT NIQPRLCLKI
Sequences:
>Translated_890_residues MTDKINDSNNFNNIHNSKTDIENSKANSLNHNVAVKLINGDIVDGIVLLSDNNSLRADNTLKESINQLINDWKNSKFEPQ DRLIIAGHKEAENINQNIRNYMKENGALKGPEYSILISGAESKKYANYMAGDRIVFQASNKDLQIQNSEFATLVSIDENK FVAKTDTGNEVSFDLNKISFKHGYATTICNPQTAFKKDVYVLHNDGVGIESSNISMIGNAEQVRLYYNMQATKNVANLIE QLSTAKANSMNSKVVEENNNVQANEVRQYQSAQNYRQNDYYSNSQEELRELKDQIASRAETIACELLGKPNEHLSKNERM RWGNHGKIVVNISGNRAGKWYDFSAGEGGDLFSLVQRERGYSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQYIQQPE SIKIANVQNLYERSSKIHGYEIDKNPHAEVVNKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEIT GVQAVYLNPETGYKADVSINRRSFGKISGSFITIAKRNVNDPNITIIAEGAETALSLQQAGIKGNIIASAGISNLTNYSP FPGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIVKPQENGDFNNLLQTCGAQSIRDIIEPEITKLTKAVEATKL TQTENNSIEKQNDITNVKELYNKSSSLYYLKQEEEAKLEAIVANKYLENHTEIYSSKIFDNPNLRSNMVFDEKTQKSWPA LTVFVKNEKGEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCA IEAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKGAIVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLTEKNESIQT NIQPRLCLKI >Mature_889_residues TDKINDSNNFNNIHNSKTDIENSKANSLNHNVAVKLINGDIVDGIVLLSDNNSLRADNTLKESINQLINDWKNSKFEPQD RLIIAGHKEAENINQNIRNYMKENGALKGPEYSILISGAESKKYANYMAGDRIVFQASNKDLQIQNSEFATLVSIDENKF VAKTDTGNEVSFDLNKISFKHGYATTICNPQTAFKKDVYVLHNDGVGIESSNISMIGNAEQVRLYYNMQATKNVANLIEQ LSTAKANSMNSKVVEENNNVQANEVRQYQSAQNYRQNDYYSNSQEELRELKDQIASRAETIACELLGKPNEHLSKNERMR WGNHGKIVVNISGNRAGKWYDFSAGEGGDLFSLVQRERGYSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQYIQQPES IKIANVQNLYERSSKIHGYEIDKNPHAEVVNKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEITG VQAVYLNPETGYKADVSINRRSFGKISGSFITIAKRNVNDPNITIIAEGAETALSLQQAGIKGNIIASAGISNLTNYSPF PGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIVKPQENGDFNNLLQTCGAQSIRDIIEPEITKLTKAVEATKLT QTENNSIEKQNDITNVKELYNKSSSLYYLKQEEEAKLEAIVANKYLENHTEIYSSKIFDNPNLRSNMVFDEKTQKSWPAL TVFVKNEKGEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITKDIETALTIRQAGVEGKILCAI EAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKGAIVCTVKNDFNNVLKTQGLYAVRNIISPEIRKLTEKNESIQTN IQPRLCLKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99371; Mature: 99239
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDKINDSNNFNNIHNSKTDIENSKANSLNHNVAVKLINGDIVDGIVLLSDNNSLRADNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCHH LKESINQLINDWKNSKFEPQDRLIIAGHKEAENINQNIRNYMKENGALKGPEYSILISGA HHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC ESKKYANYMAGDRIVFQASNKDLQIQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISF CCCHHHHHCCCCEEEEEECCCCEEEECCCEEEEEEECCCEEEEECCCCCEEEEEHEEEEE KHGYATTICNPQTAFKKDVYVLHNDGVGIESSNISMIGNAEQVRLYYNMQATKNVANLIE CCCCEEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEECHHHHHHHHHHH QLSTAKANSMNSKVVEENNNVQANEVRQYQSAQNYRQNDYYSNSQEELRELKDQIASRAE HHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH TIACELLGKPNEHLSKNERMRWGNHGKIVVNISGNRAGKWYDFSAGEGGDLFSLVQRERG HEEHHHCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCC YSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQYIQQPESIKIANVQNLYERSSKIHGY CCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHCCCCCEEEECHHHHHHHHCCCCCE EIDKNPHAEVVNKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEIT ECCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEE GVQAVYLNPETGYKADVSINRRSFGKISGSFITIAKRNVNDPNITIIAEGAETALSLQQA EEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHC GIKGNIIASAGISNLTNYSPFPGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIV CCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEEE KPQENGDFNNLLQTCGAQSIRDIIEPEITKLTKAVEATKLTQTENNSIEKQNDITNVKEL ECCCCCCHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH YNKSSSLYYLKQEEEAKLEAIVANKYLENHTEIYSSKIFDNPNLRSNMVFDEKTQKSWPA HCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCE LTVFVKNEKGEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITK EEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEC DIETALTIRQAGVEGKILCAIEAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKGAI CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCE VCTVKNDFNNVLKTQGLYAVRNIISPEIRKLTEKNESIQTNIQPRLCLKI EEEECCCHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCEECCCCCEEEEEC >Mature Secondary Structure TDKINDSNNFNNIHNSKTDIENSKANSLNHNVAVKLINGDIVDGIVLLSDNNSLRADNT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCHH LKESINQLINDWKNSKFEPQDRLIIAGHKEAENINQNIRNYMKENGALKGPEYSILISGA HHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC ESKKYANYMAGDRIVFQASNKDLQIQNSEFATLVSIDENKFVAKTDTGNEVSFDLNKISF CCCHHHHHCCCCEEEEEECCCCEEEECCCEEEEEEECCCEEEEECCCCCEEEEEHEEEEE KHGYATTICNPQTAFKKDVYVLHNDGVGIESSNISMIGNAEQVRLYYNMQATKNVANLIE CCCCEEEECCCCHHHCCCEEEEECCCCCEECCCEEEECCCEEEEEEEECHHHHHHHHHHH QLSTAKANSMNSKVVEENNNVQANEVRQYQSAQNYRQNDYYSNSQEELRELKDQIASRAE HHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH TIACELLGKPNEHLSKNERMRWGNHGKIVVNISGNRAGKWYDFSAGEGGDLFSLVQRERG HEEHHHCCCCHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCC YSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQYIQQPESIKIANVQNLYERSSKIHGY CCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHCCCCCEEEECHHHHHHHHCCCCCE EIDKNPHAEVVNKYLENRGITFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEIT ECCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEE GVQAVYLNPETGYKADVSINRRSFGKISGSFITIAKRNVNDPNITIIAEGAETALSLQQA EEEEEEECCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHC GIKGNIIASAGISNLTNYSPFPGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIV CCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHEEEEE KPQENGDFNNLLQTCGAQSIRDIIEPEITKLTKAVEATKLTQTENNSIEKQNDITNVKEL ECCCCCCHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH YNKSSSLYYLKQEEEAKLEAIVANKYLENHTEIYSSKIFDNPNLRSNMVFDEKTQKSWPA HCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCE LTVFVKNEKGEITGAKILALNSKTCNKADVAEKSVGTISGSFAEIAQQNSKYSPVTIITK EEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEEC DIETALTIRQAGVEGKILCAIEAENLQNYNPGSKEKIILAVKNDVNTEKAEKVLEDKGAI CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCE VCTVKNDFNNVLKTQGLYAVRNIISPEIRKLTEKNESIQTNIQPRLCLKI EEEECCCHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA