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The map label for this gene is dapD [H]

Identifier: 189184522

GI number: 189184522

Start: 1643433

End: 1644320

Strand: Reverse

Name: dapD [H]

Synonym: OTT_1615

Alternate gene names: 189184522

Gene position: 1644320-1643433 (Counterclockwise)

Preceding gene: 189184527

Following gene: 189184521

Centisome position: 81.85

GC content: 34.12

Gene sequence:

>888_bases
TTGTTCAAAGGTTTTTTGAAATACAGAGTAAATATAATGGAAAAAAATACTGGTAAATTATATAAATATATTAATAAAGT
CGAAGATTTTTGGACAAAGCGCAATCAATTGATTAAAGGTGCTGAAGATTATAAAGTAGCATGCAGATGGCTGCAAAGTA
TCTTAGATGATCTAGACAAAGGTATAGTGAGAGCTTGTGAAAAAAAGCATGGAGAATGGCATACTAATGAGTGGGTTAAA
AAAGCTATATTACTGTATTTTAAATTACATGATAGCGTTCTTACATCAACACAAGTTGCTTGTTATTATGATAAAATTCC
ATTGAAGTTTTATTCTTCTGGATCTGAAGAAGATAACTTTAAAGAACTTGGTATACGAGTAGTACCTGGCGCAATCATTA
GAAAAGGAGCATATATTGGCCATAGCACAGTCATAATGCCATCATTTATTAATATAGGAGCGTATGTTGGTAGCGGTACA
ATGATTGATAGTTGGGCTACTGTTGGATCATGTGCATATGTTGGTAATAAGTGTCATATTTCTGGTGGAGTAGGCTTAGG
TGGAGTACTTGAACCAATACAAAATGCTTCAGTGATTGTTGAAGATAATTGTTTTATTGGAGCAAGGAGTCAAATTGCTG
AAGGAGTAATAGTTGAAAGTGGAGCTGTTATAGGTACTGGAGTACAGATTAGTGCTTCAACAAAGATAGTTGATCGGGAA
ACTGGAGAAGTAACTTATGGCCGTATTCCAGCTAATTCAGTTGTAGTCCCTGGAAGCTTACCACAGCCCTATTCAAATAA
CATACAGTTGCAATGCGCTGTGATTATTAAGAAAGTTGATAATAATACTAGAGCTAAAACTTCAATCAATGATTTATTAA
GATGCTAG

Upstream 100 bases:

>100_bases
AAAAACAGTATTACATTGAGGACATGAAATCTGCATTTATGTTTCAAATTTTTATTGCGCTATCAAGTTATCTATCTATA
TTCTATATGTAAGATTAAGG

Downstream 100 bases:

>100_bases
TTTTCCATATTAGTAGAAGTAATAGTTGTTTCTATACTGCCATTAAAAAGAATCGATGGATTCTGAATACTTATTAATCG
ATTGGCAAGCAATGCCAGAT

Product: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MFKGFLKYRVNIMEKNTGKLYKYINKVEDFWTKRNQLIKGAEDYKVACRWLQSILDDLDKGIVRACEKKHGEWHTNEWVK
KAILLYFKLHDSVLTSTQVACYYDKIPLKFYSSGSEEDNFKELGIRVVPGAIIRKGAYIGHSTVIMPSFINIGAYVGSGT
MIDSWATVGSCAYVGNKCHISGGVGLGGVLEPIQNASVIVEDNCFIGARSQIAEGVIVESGAVIGTGVQISASTKIVDRE
TGEVTYGRIPANSVVVPGSLPQPYSNNIQLQCAVIIKKVDNNTRAKTSINDLLRC

Sequences:

>Translated_295_residues
MFKGFLKYRVNIMEKNTGKLYKYINKVEDFWTKRNQLIKGAEDYKVACRWLQSILDDLDKGIVRACEKKHGEWHTNEWVK
KAILLYFKLHDSVLTSTQVACYYDKIPLKFYSSGSEEDNFKELGIRVVPGAIIRKGAYIGHSTVIMPSFINIGAYVGSGT
MIDSWATVGSCAYVGNKCHISGGVGLGGVLEPIQNASVIVEDNCFIGARSQIAEGVIVESGAVIGTGVQISASTKIVDRE
TGEVTYGRIPANSVVVPGSLPQPYSNNIQLQCAVIIKKVDNNTRAKTSINDLLRC
>Mature_295_residues
MFKGFLKYRVNIMEKNTGKLYKYINKVEDFWTKRNQLIKGAEDYKVACRWLQSILDDLDKGIVRACEKKHGEWHTNEWVK
KAILLYFKLHDSVLTSTQVACYYDKIPLKFYSSGSEEDNFKELGIRVVPGAIIRKGAYIGHSTVIMPSFINIGAYVGSGT
MIDSWATVGSCAYVGNKCHISGGVGLGGVLEPIQNASVIVEDNCFIGARSQIAEGVIVESGAVIGTGVQISASTKIVDRE
TGEVTYGRIPANSVVVPGSLPQPYSNNIQLQCAVIIKKVDNNTRAKTSINDLLRC

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=50.9225092250922, Blast_Score=263, Evalue=1e-71,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 32482; Mature: 32482

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKGFLKYRVNIMEKNTGKLYKYINKVEDFWTKRNQLIKGAEDYKVACRWLQSILDDLDK
CCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GIVRACEKKHGEWHTNEWVKKAILLYFKLHDSVLTSTQVACYYDKIPLKFYSSGSEEDNF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCCCH
KELGIRVVPGAIIRKGAYIGHSTVIMPSFINIGAYVGSGTMIDSWATVGSCAYVGNKCHI
HHCCEEEECHHHHHCCCCCCCCEEEHHHHHHHHEEECCCCEEECHHHHCHHEEECCEEEE
SGGVGLGGVLEPIQNASVIVEDNCFIGARSQIAEGVIVESGAVIGTGVQISASTKIVDRE
CCCCCCCHHHHHCCCCEEEEECCEEECCHHHHHCCEEEECCEEEECCEEEECCCEEEECC
TGEVTYGRIPANSVVVPGSLPQPYSNNIQLQCAVIIKKVDNNTRAKTSINDLLRC
CCCEEEEECCCCCEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MFKGFLKYRVNIMEKNTGKLYKYINKVEDFWTKRNQLIKGAEDYKVACRWLQSILDDLDK
CCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GIVRACEKKHGEWHTNEWVKKAILLYFKLHDSVLTSTQVACYYDKIPLKFYSSGSEEDNF
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCCCH
KELGIRVVPGAIIRKGAYIGHSTVIMPSFINIGAYVGSGTMIDSWATVGSCAYVGNKCHI
HHCCEEEECHHHHHCCCCCCCCEEEHHHHHHHHEEECCCCEEECHHHHCHHEEECCEEEE
SGGVGLGGVLEPIQNASVIVEDNCFIGARSQIAEGVIVESGAVIGTGVQISASTKIVDRE
CCCCCCCHHHHHCCCCEEEEECCEEECCHHHHHCCEEEECCEEEECCEEEECCCEEEECC
TGEVTYGRIPANSVVVPGSLPQPYSNNIQLQCAVIIKKVDNNTRAKTSINDLLRC
CCCEEEEECCCCCEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA