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The map label for this gene is virB9 [H]

Identifier: 189184477

GI number: 189184477

Start: 1598385

End: 1598822

Strand: Reverse

Name: virB9 [H]

Synonym: OTT_1570

Alternate gene names: 189184477

Gene position: 1598822-1598385 (Counterclockwise)

Preceding gene: 189184478

Following gene: 189184476

Centisome position: 79.58

GC content: 28.54

Gene sequence:

>438_bases
ATGATGATTATAGTTAGAATATTGCTTATTTTAAATTTGTTATTTTCCTCAGTAGTATATAGTAGTTATTTTGAGGAAGA
ATTTCCTACTACAGCTGATGATAGAATTAAAACTTACATATATAATCCTAGCGAAGTTTATCTATTAGTATTGCATGCTG
GATTTCAATCAAGTATTGAGTTTGCTAAAAATGAGGAGATTAGAAGTATTTTCTTTGGCGATAATTATGCTTGGGAAGTT
ACATATCCACTACCAAACAGAATATTTATTAAATCCCTTGAAAAGAATGTGCGAACCAATATGACTATTATTACAAATAA
GAGAACATATGAGTTTGATATTGTATCTAAGGAGCTAGAAGTAGGGCGTGAACATGACTTAGTTTATTTAATTAGATTTT
ATTATCCACAAAAGAAAGCGTGCAATAAAGAAAAGTAA

Upstream 100 bases:

>100_bases
AAGATTGTTGTAGTACAGTATCAATATGTTCCTATGGAACTTTCTCCTGAAGAATTTGATATTAATCCAGTAGGTTTTCA
AATTATAGGATATAGAATAG

Downstream 100 bases:

>100_bases
TGCAAAATATTAATAACGATTCTAATCAAGATACACAGGGCCAATGTGATCATTCTGAGGATTCTAAAGTAGTTGGACCA
GAAGTACATAATGAATTTTC

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MMIIVRILLILNLLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEV
TYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK

Sequences:

>Translated_145_residues
MMIIVRILLILNLLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEV
TYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK
>Mature_145_residues
MMIIVRILLILNLLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIEFAKNEEIRSIFFGDNYAWEV
TYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELEVGREHDLVYLIRFYYPQKKACNKEK

Specific function: Component of the type IV secretion system virB/virD4 which could be a major virulence determinant for subversion of human endothelial cell (HEC) function [H]

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 17291; Mature: 17291

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIIVRILLILNLLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHH
FAKNEEIRSIFFGDNYAWEVTYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELE
HCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCEEEEEEEHHHHH
VGREHDLVYLIRFYYPQKKACNKEK
CCCCCCEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MMIIVRILLILNLLFSSVVYSSYFEEEFPTTADDRIKTYIYNPSEVYLLVLHAGFQSSIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCCCHHHH
FAKNEEIRSIFFGDNYAWEVTYPLPNRIFIKSLEKNVRTNMTIITNKRTYEFDIVSKELE
HCCCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCEEEEECCCEEEEEEEHHHHH
VGREHDLVYLIRFYYPQKKACNKEK
CCCCCCEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA