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The map label for this gene is virB8

Identifier: 189184478

GI number: 189184478

Start: 1598806

End: 1599486

Strand: Reverse

Name: virB8

Synonym: OTT_1571

Alternate gene names: NA

Gene position: 1599486-1598806 (Counterclockwise)

Preceding gene: 189184479

Following gene: 189184477

Centisome position: 79.62

GC content: 28.49

Gene sequence:

>681_bases
ATGTTTTTTTGGAAAAATAAAAAGAAAGTTGAACAGCAAAAGCAAAATAAGCCTGCTATAAAAAGTTGGTTTAATGATCA
TTATGAAACTGTTTTGGTACAGCGTAACATTGCTGTATTGTTATCATTTATATGTATAATATTAATTTTTATAGCAGTAG
TTGCTGTGATGAAAATATCTTTAGCAAGAAATTTTGAACCATTTGTAATACAGATTGAAGAGAAAACTGGGGCAACCAGA
GTTGTTAATCCAGTTGGAATTGAAGTATTAAATACTGAAAAAGCGTTAGCGCAATATTTTATTAAATTATATATTTCTGC
TAGGGAAACATATAATCCAGTAGATTTTGAGATTAAAGCTAGACAAACTATTAAATTATTGTCTAATAACAATGTTTATT
GGTCATATTTGAATTTTATTAATCGAAAGGAAAATGATCCAAGGTTAATATATGGGCAACGTGAAACTACAACATTAAAA
GTTAGATCATGGTCAGAGTTGCCTGACAGAAGGTTTATTGTTCGAATTGCAATACATGAATCTATAAGCGGAAAGGTATT
TAATAAGATTGTTGTAGTACAGTATCAATATGTTCCTATGGAACTTTCTCCTGAAGAATTTGATATTAATCCAGTAGGTT
TTCAAATTATAGGATATAGAATAGATGATGATTATAGTTAG

Upstream 100 bases:

>100_bases
GATAACAATTTATTAGTAATTAAAAAGTAATGTTACACTTAACATAATTATAAAAAAGCTTACTATAAAAATAAATAGTA
ATATACTTATTAATATTGAA

Downstream 100 bases:

>100_bases
AATATTGCTTATTTTAAATTTGTTATTTTCCTCAGTAGTATATAGTAGTTATTTTGAGGAAGAATTTCCTACTACAGCTG
ATGATAGAATTAAAACTTAC

Product: type IV secretion system protein VirB8

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS

Sequences:

>Translated_226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
>Mature_226_residues
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKISLARNFEPFVIQIEEKTGATR
VVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKARQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLK
VRSWSELPDRRFIVRIAIHESISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS

Specific function: Unknown

COG id: COG3736

COG function: function code U; Type IV secretory pathway, component VirB8

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007430 [H]

Pfam domain/function: PF04335 VirB8 [H]

EC number: NA

Molecular weight: Translated: 26594; Mature: 26594

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKIS
CCEECCHHHHHHHHCCCCHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LARNFEPFVIQIEEKTGATRVVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKA
HHCCCCCEEEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHHEECCCCCCCCCEEEEC
RQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLKVRSWSELPDRRFIVRIAIHE
CEEEEEEECCCEEEEEHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEC
SISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
CCCCCEEEEEEEEEEEEECCEECCCCCCCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MFFWKNKKKVEQQKQNKPAIKSWFNDHYETVLVQRNIAVLLSFICIILIFIAVVAVMKIS
CCEECCHHHHHHHHCCCCHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
LARNFEPFVIQIEEKTGATRVVNPVGIEVLNTEKALAQYFIKLYISARETYNPVDFEIKA
HHCCCCCEEEEEECCCCCEEEECCCCEEEECHHHHHHHHHHHHHEECCCCCCCCCEEEEC
RQTIKLLSNNNVYWSYLNFINRKENDPRLIYGQRETTTLKVRSWSELPDRRFIVRIAIHE
CEEEEEEECCCEEEEEHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEEEC
SISGKVFNKIVVVQYQYVPMELSPEEFDINPVGFQIIGYRIDDDYS
CCCCCEEEEEEEEEEEEECCEECCCCCCCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]