| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184460
Identifier: 189184460
GI number: 189184460
Start: 1581602
End: 1582480
Strand: Reverse
Name: 189184460
Synonym: OTT_1553
Alternate gene names: NA
Gene position: 1582480-1581602 (Counterclockwise)
Preceding gene: 189184461
Following gene: 189184457
Centisome position: 78.77
GC content: 28.67
Gene sequence:
>879_bases ATGCATTTATCAAGATTTTTAGATCCAAAGAATGATGTAGCATTTAAAAAGATATTTGGATCAGAAAAAAACAAGGACAT ACTAATACATTTTCTGAACGATATATTGTTGTTTGAAGGGAATAGAGAAATAACAGAAGTAGAGTTTTTAGGAACGATAT TAGATGCAGACATAGCGTCTAAAAAAGAATCAATAGTAGATGTTTTGTGTAAAGATAAAAACGGTGCGCAATATATAATA GAAATGCAAGTAGATCCTACACAAGGATTTGAAAAAAGAGCACAGTATTATGCCGAAAAAGCATATGGTAGGCAACCAAA TAGAGGAAAGGAAGGAAAATACTCAGACCTAAAGGAAGTTATATTTATAGCTATAGCAGATTATAAATTGTTTCCAAATA AAGAAGACTATATATCAAGGCATGTAATACTGGATAAAAAAACATATGAGCATGATTTAAAAGACTTTTCATTTACCTTT ATAGAATTACCAAAATTTAAAAAAAATAGAGTGGAAGAGTTAAATGATATAACAGAGAAGTGGTGCTATTTTTTTAAACA TGCAAAAGAAACAACATTAGATGGATATAATAAAATAATAGGTGAAGATTTAATAATAAAAAGAGCTTATGAAGCATTAG ATCAGTTTAACTGGAGCGAAGATGAACTAATAACCTATGAACAAGAGTTAAAGCGTATATGGGATAATAAAGCAGTAGAA GATTATAAACTCGAACGCGCTAAAGCTGAAGGCAAAGCCGAAGCAAAAAAAGCTTTTGCAATAAAATTATTGAAATCTGA ATTATCAGTTGAGACAATTGCTGAATATACGGATTTATCAATACAAGAAGTATTAAATTTAAAAAATAGTGTAAAATAA
Upstream 100 bases:
>100_bases TATAATGTAGTGAATTGCAGAAATTAAAATTCAATAAGAGAATGTTCATGTAAGTTATTTTGTTGTATAATTTAAAAAGA ATAGAAAATATGAACAACAT
Downstream 100 bases:
>100_bases TAATGAATATACAACACAAAATCTTACTTTTGATGTGTTGTATGCTACTTCTATTAGATGCTTTATATCACACTACAAGT TCTATACTATACTGAACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 292; Mature: 292
Protein sequence:
>292_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAEKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKNRVEELNDITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEAKKAFAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK
Sequences:
>Translated_292_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAEKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKNRVEELNDITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEAKKAFAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK >Mature_292_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAEKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKNRVEELNDITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEAKKAFAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34230; Mature: 34230
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIAS CCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH KKESIVDVLCKDKNGAQYIIEMQVDPTQGFEKRAQYYAEKAYGRQPNRGKEGKYSDLKEV HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH IFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTFIELPKFKKNRVEELNDITEK HHHHEECCEECCCCHHHHHHHEEECCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH WCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH DYKLERAKAEGKAEAKKAFAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIAS CCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH KKESIVDVLCKDKNGAQYIIEMQVDPTQGFEKRAQYYAEKAYGRQPNRGKEGKYSDLKEV HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH IFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTFIELPKFKKNRVEELNDITEK HHHHEECCEECCCCHHHHHHHEEECCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHH WCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH DYKLERAKAEGKAEAKKAFAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA