| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184446
Identifier: 189184446
GI number: 189184446
Start: 1566412
End: 1567200
Strand: Reverse
Name: 189184446
Synonym: OTT_1539
Alternate gene names: NA
Gene position: 1567200-1566412 (Counterclockwise)
Preceding gene: 189184450
Following gene: 189184445
Centisome position: 78.01
GC content: 34.47
Gene sequence:
>789_bases ATGAAAATGAGAAAATTTTGGCTAGCCATAGCTTTATCATTACCTTGTTCAGTTCCAGCTGTTGTTGCTTATGATTTAAG TGATTTAAAAAAACTAGAAGAGTTAGAGCAGCTTGAAAAATTGCAACGCTTACAGCAGCTACAACAGGAAGAGAATAAGC CAAGTTATTATGTTAAATTATATGCAGGACGCTCTTCCTGTGTTCCATCAGAATTAGATTTTTCAGGATTAGATAATGAT CCAAATCTCCGTATACTTACTGAGATGATTAATGTTGCTAATGAATACGCTCATAGTCCTATCTTTGGGCTATCTTTAGG TATGTATTGTACTAGATCGCTTATGCTAGAACTATCTCTTAGTTACATGCAACATATGATATTTGGATGCGATGTGAGCA TGAATACACCTAGAGGCTTGATAAAATTCACGAATCTTCCAATGGGAGCATTTGTAAAAGCAATTGCTGACTTAACAGAA AGTTCTTTTCCTAGTACTTCAGCTGCAGGTAAGTTATATTGGGATATGTGTAGTGGAAAGCTTGGATCACTTTTTGTTAC TGGAGGTTTGTGTATTCAATATGTACAAATGCAAGAGAAAGTTTTTTTGCCTGGTGGTATAGTAGGAGTAGGAGCTGCTA TTAATATAACCGAAAGTGTAAGCTTAAATGGAGAAATTAATTGTACATACTTAAGTGGATCATTTAGTTCTTTGCTCAGT AATGACAGTTTTAAGATAGAGAGTTGGTATGGCTATAATATGTTACTAGGTATCAAGTATAACTTTTAG
Upstream 100 bases:
>100_bases GCTTAATTTTATAAAACTGTTTTGCATCTTTCAATGTGTTTATTGCGTAACATCATTATATTATTTAGTAAATTTAAAAT AGTATGAATAAAATTTAATT
Downstream 100 bases:
>100_bases ATACTAAACCACATTTCATTGCTAATTATCATGGTTGTTATATAGATTATAGATATTTTGTTATTACATAGTTAATGGTA TGCGTTAAGCATTTAAAATA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MKMRKFWLAIALSLPCSVPAVVAYDLSDLKKLEELEQLEKLQRLQQLQQEENKPSYYVKLYAGRSSCVPSELDFSGLDND PNLRILTEMINVANEYAHSPIFGLSLGMYCTRSLMLELSLSYMQHMIFGCDVSMNTPRGLIKFTNLPMGAFVKAIADLTE SSFPSTSAAGKLYWDMCSGKLGSLFVTGGLCIQYVQMQEKVFLPGGIVGVGAAINITESVSLNGEINCTYLSGSFSSLLS NDSFKIESWYGYNMLLGIKYNF
Sequences:
>Translated_262_residues MKMRKFWLAIALSLPCSVPAVVAYDLSDLKKLEELEQLEKLQRLQQLQQEENKPSYYVKLYAGRSSCVPSELDFSGLDND PNLRILTEMINVANEYAHSPIFGLSLGMYCTRSLMLELSLSYMQHMIFGCDVSMNTPRGLIKFTNLPMGAFVKAIADLTE SSFPSTSAAGKLYWDMCSGKLGSLFVTGGLCIQYVQMQEKVFLPGGIVGVGAAINITESVSLNGEINCTYLSGSFSSLLS NDSFKIESWYGYNMLLGIKYNF >Mature_262_residues MKMRKFWLAIALSLPCSVPAVVAYDLSDLKKLEELEQLEKLQRLQQLQQEENKPSYYVKLYAGRSSCVPSELDFSGLDND PNLRILTEMINVANEYAHSPIFGLSLGMYCTRSLMLELSLSYMQHMIFGCDVSMNTPRGLIKFTNLPMGAFVKAIADLTE SSFPSTSAAGKLYWDMCSGKLGSLFVTGGLCIQYVQMQEKVFLPGGIVGVGAAINITESVSLNGEINCTYLSGSFSSLLS NDSFKIESWYGYNMLLGIKYNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29092; Mature: 29092
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMRKFWLAIALSLPCSVPAVVAYDLSDLKKLEELEQLEKLQRLQQLQQEENKPSYYVKL CCHHHEEHHHHHHCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE YAGRSSCVPSELDFSGLDNDPNLRILTEMINVANEYAHSPIFGLSLGMYCTRSLMLELSL EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH SYMQHMIFGCDVSMNTPRGLIKFTNLPMGAFVKAIADLTESSFPSTSAAGKLYWDMCSGK HHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHCCC LGSLFVTGGLCIQYVQMQEKVFLPGGIVGVGAAINITESVSLNGEINCTYLSGSFSSLLS CCCEEEEHHHHHHHHHHHHEEECCCCEEECCEEEEEEEEEECCCEEEEEEECCCHHHHHC NDSFKIESWYGYNMLLGIKYNF CCCEEEEEEECCEEEEEEEECC >Mature Secondary Structure MKMRKFWLAIALSLPCSVPAVVAYDLSDLKKLEELEQLEKLQRLQQLQQEENKPSYYVKL CCHHHEEHHHHHHCCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE YAGRSSCVPSELDFSGLDNDPNLRILTEMINVANEYAHSPIFGLSLGMYCTRSLMLELSL EECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH SYMQHMIFGCDVSMNTPRGLIKFTNLPMGAFVKAIADLTESSFPSTSAAGKLYWDMCSGK HHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHCCC LGSLFVTGGLCIQYVQMQEKVFLPGGIVGVGAAINITESVSLNGEINCTYLSGSFSSLLS CCCEEEEHHHHHHHHHHHHEEECCCCEEECCEEEEEEEEEECCCEEEEEEECCCHHHHHC NDSFKIESWYGYNMLLGIKYNF CCCEEEEEEECCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA