Click here to switch to the map view.

The map label for this gene is 189184407

Identifier: 189184407

GI number: 189184407

Start: 1528411

End: 1529229

Strand: Reverse

Name: 189184407

Synonym: OTT_1500

Alternate gene names: NA

Gene position: 1529229-1528411 (Counterclockwise)

Preceding gene: 189184408

Following gene: 189184406

Centisome position: 76.12

GC content: 36.75

Gene sequence:

>819_bases
TTGAGAGCAAAATGGACAGAGGAAATACTTAATGAAGTCAAAACATTAAAAGATAGATTAGAAAGTGTAATAGAAAGCAG
ATATTTAGAGACTACAGCCCAAATTAATAATTTTAACCAAAAACTTGAGATATTGGAGAATCAGCCTAAACAGAGTCTAT
ATAATAATGATAGTGATGAATTTAGTTCTGATCTTAATCATCATATTTTAAATTCACCACATGATAACAAAACAGAGCAA
GCTCCTGTAGTAGTAGTAAAGCCTTATGTAAATCTTAGGAGAGCTGGATCTGAGCCAAAAAAAAATGTTGAGAACTATGT
TACTAGCGGTAGTTCTGCTAGAGCTGTGCTACTTATTGAAGTCGTTGTAGGTACTGGAACTAATAGCTCTTCATCACCAG
AACCAATTGTTCTGCAGTTGCTTGATACAGCAATTCTTTATGATAAATATAAAACTGATCAAATCAAAAAGGCAATTTTA
ATTGGATCCTGTAACGGAGAGATGTCCTCAGAGAGAGCTAAATGTCGCATCGAAACTCTTTCAGTAGTCAATAACCAAGG
AGATATTATCGAGAAAAAGGTGGAAGGCTGGTTGATAGGCGAAGACGGACGTTCTGGAATTAAAGGAATCGTGGTGGATA
AATCGTCTAACATAGCAGGCATGGCTGCATTAAATGGAGTATTTAGCAGTATAGCTAAGTTTCTGCAATCTAAGGCTATT
AAACCTGATATGCTACCAACGTTAAACCTAGTAGCTGGAGGCCAACAACAAGAGTTTCAGATTGGAGAGGTTTCAGTCTG
GAGCTTACGCTGGAGCTAG

Upstream 100 bases:

>100_bases
ATATTTTTTATCTGAAAGTGGTAAGACGAAATAACCTATAGCTTTTACAGAAAATCGTGAGTCAAGAGAAGCAATTTCTG
GAATAGAACAAGCTGTAGAT

Downstream 100 bases:

>100_bases
CAATGCTTTTGATAAGCTAGCTGATTTTGCTATAAAACGAGCTGATTCTATGAGCCCAGTCGTTCTTATTGCGTCAGGTA
GAGTCATAGATGTTGTATTT

Product: putative conjugative transfer protein TraB

Products: NA

Alternate protein names: TraB Pilus Assembly Family Protein; F Pilus Assembly Protein TraB; Sex Pilus Assembly Protein; Pilus Assembly Protein; Sex Pilus Assembly; Plasmid-Like Sex Pilus Assembly Protein TraB; Pilus Biogenesis Protein; Conjugative Transfer Factor TraB; TraB Pilus Assembly; Conjugal Transfer Protein TraB

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRAKWTEEILNEVKTLKDRLESVIESRYLETTAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHILNSPHDNKTEQ
APVVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYDKYKTDQIKKAIL
IGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAI
KPDMLPTLNLVAGGQQQEFQIGEVSVWSLRWS

Sequences:

>Translated_272_residues
MRAKWTEEILNEVKTLKDRLESVIESRYLETTAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHILNSPHDNKTEQ
APVVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYDKYKTDQIKKAIL
IGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAI
KPDMLPTLNLVAGGQQQEFQIGEVSVWSLRWS
>Mature_272_residues
MRAKWTEEILNEVKTLKDRLESVIESRYLETTAQINNFNQKLEILENQPKQSLYNNDSDEFSSDLNHHILNSPHDNKTEQ
APVVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIEVVVGTGTNSSSSPEPIVLQLLDTAILYDKYKTDQIKKAIL
IGSCNGEMSSERAKCRIETLSVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAI
KPDMLPTLNLVAGGQQQEFQIGEVSVWSLRWS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30090; Mature: 30090

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKWTEEILNEVKTLKDRLESVIESRYLETTAQINNFNQKLEILENQPKQSLYNNDSDE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
FSSDLNHHILNSPHDNKTEQAPVVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIE
HHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEE
VVVGTGTNSSSSPEPIVLQLLDTAILYDKYKTDQIKKAILIGSCNGEMSSERAKCRIETL
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHH
SVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAI
HHHCCCCHHHHHHHCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
KPDMLPTLNLVAGGQQQEFQIGEVSVWSLRWS
CCCCCCCHHHHCCCCCCCEEECCEEEEEEECC
>Mature Secondary Structure
MRAKWTEEILNEVKTLKDRLESVIESRYLETTAQINNFNQKLEILENQPKQSLYNNDSDE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
FSSDLNHHILNSPHDNKTEQAPVVVVKPYVNLRRAGSEPKKNVENYVTSGSSARAVLLIE
HHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHCCCCCCCEEEEEE
VVVGTGTNSSSSPEPIVLQLLDTAILYDKYKTDQIKKAILIGSCNGEMSSERAKCRIETL
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHH
SVVNNQGDIIEKKVEGWLIGEDGRSGIKGIVVDKSSNIAGMAALNGVFSSIAKFLQSKAI
HHHCCCCHHHHHHHCCEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC
KPDMLPTLNLVAGGQQQEFQIGEVSVWSLRWS
CCCCCCCHHHHCCCCCCCEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA