| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189184388
Identifier: 189184388
GI number: 189184388
Start: 1508974
End: 1510758
Strand: Reverse
Name: 189184388
Synonym: OTT_1481
Alternate gene names: NA
Gene position: 1510758-1508974 (Counterclockwise)
Preceding gene: 189184391
Following gene: 189184386
Centisome position: 75.2
GC content: 28.52
Gene sequence:
>1785_bases ATGAATGCAGCAGCTTATGAAAAATCAGTAGCACGTAATTATGCAGATACAGGCGAGGTAGACAAACTATCAAGATTGAT CAACTCTTATCCTGATTTAAAAAGTGAGATAGTACCGTCCTCTGGTTTAGGTCTTATGTCTCATGCATGCTCCAACATAT CAAAAAGATCTATGGGATCATTACTAAGTAGCAGAACTAAAAATAGTAATAATTCTTTGGATATATCAGATAATGCTAAA GAGGAAGATGCAATAACAGATGCAGTGAGTAGACATTTATTTGATCACGCGAAGTGCATGATTCAAAAATCTAAATTAGA TAAGTCTCTAATATTAAAAAGTATTATCAAAGGAGCTATAAATTTACATCCTATAATAATAGCACAACAAGAGGAGATGC ATCCGCTACGTGGTATAGTAATAACTAACATACTTGATAAAGTTAAGAATGAGCAAGCGCACTTGCAGATACATTCTATG ATTACAGAAGGTGATAACTGTAAAATTGATAAAAAATTTGCTGTAGAGGATCTAGGTAAGTTAATTTTTGGAAAAGTTAT TCAGTTGTTAATAATTTGTGATGATGGTGGAATAAGTCATCATAAAAATTTACTACAAGATTATCCTTCTGTTGAAATTA AGACTACAGTTTTTGGAAAGCTTGCAATGGATTTATTTACAATATCTGGCGGTAATTTTGAAAGATATGAGAAAACAGTT TATCAATTTCCTGCTACATCATGTAATAGAATAAATCATAACGCTATGATACTAGAATCTACTAAGCAAACATTATTACG TGTTATTAAAGTTAGTTATTTGCACAAGCTGATACATAATAATCCATCAGAAATACACTTTCAAGGTGATGAAGAATTAG ATAATTCAATAAAATTACTTGAAGCTAGACTTTTATATTTAATAAACACATGTAATAAAAGATCAGATAAAGAAGAAAAT TATACAATATTATTAGATTTTGATGATGTTAGCAATATTATTCATGATATAAAATTTTTAACAAGCACTTATACAAACAA TAAAGAATATAGTAGTTCCACAATACAAGCAGCTAAAGATTGTATATCTAATCTTGCTAAACAAGGAATAGTTGAAAATT TAAAAACTAATTTTGAAAACGATATGGCTATTCTGGCTTGTCAAATTAATTCGATATTAAATAATGATATCAATATTATG CAAATAGTGCCTATCATTTCTCTTGTAAAACAGATTGATGAGAAAGAACTAGTACTAATAAAATTCTCTGATTCTGAGAA AGAGTTAATAAAAAATAATATAAAATTTGACTATAGTATGAATGGCTATATGTCACCTAAATTTAATGAAGTAAGCAACT TTCAGCAACTTGAGAAATCACTGAAATACTATGAAAAAACACCAGAAGCGTTATCTCCTATTCTAGGGTTGTTAAAAACA GCTCATGATTCTAGAAAAATCTCTAAACTTGCAAATAATATCAATACTGATTATGAAACAATAAAATCAGAATTATGCAC ATTACGAAACGATTATAACGAAGAAAAATTTGAAGATGAAGATAACGATGTAACAAAATCGATGAAAAGTACAATACAAT CCTTGAATGTTAAGAAAACTATAGTTAGTAATATTACTTATCTAGCTAATAAAATAAATCAAGCTTTAAATATTTCTTCT ATTGTATCTGTACTTGAAGAGTATAACAATAATTATCAGACACTTGATATACAGCATGACTACGAACCGCTAGTATTAGG CGACTCAGTACATACAATAGCTTGA
Upstream 100 bases:
>100_bases ATAAATTTTTATTAAGAAATACTTAAAATGTATTGACAAAAGATGCTCTCATTTTATTATTAGTTAATATTTAATAAATA TTTAATAAGTAGTAATAAAT
Downstream 100 bases:
>100_bases ATGCTGATATCAATACATAAGCTTTAAGTATTTGATTTTGATATAGTGCGACATGATGTCACTCAAACATAGGCTACAGT AAATGTAGCAAGGCAGCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 594; Mature: 594
Protein sequence:
>594_residues MNAAAYEKSVARNYADTGEVDKLSRLINSYPDLKSEIVPSSGLGLMSHACSNISKRSMGSLLSSRTKNSNNSLDISDNAK EEDAITDAVSRHLFDHAKCMIQKSKLDKSLILKSIIKGAINLHPIIIAQQEEMHPLRGIVITNILDKVKNEQAHLQIHSM ITEGDNCKIDKKFAVEDLGKLIFGKVIQLLIICDDGGISHHKNLLQDYPSVEIKTTVFGKLAMDLFTISGGNFERYEKTV YQFPATSCNRINHNAMILESTKQTLLRVIKVSYLHKLIHNNPSEIHFQGDEELDNSIKLLEARLLYLINTCNKRSDKEEN YTILLDFDDVSNIIHDIKFLTSTYTNNKEYSSSTIQAAKDCISNLAKQGIVENLKTNFENDMAILACQINSILNNDINIM QIVPIISLVKQIDEKELVLIKFSDSEKELIKNNIKFDYSMNGYMSPKFNEVSNFQQLEKSLKYYEKTPEALSPILGLLKT AHDSRKISKLANNINTDYETIKSELCTLRNDYNEEKFEDEDNDVTKSMKSTIQSLNVKKTIVSNITYLANKINQALNISS IVSVLEEYNNNYQTLDIQHDYEPLVLGDSVHTIA
Sequences:
>Translated_594_residues MNAAAYEKSVARNYADTGEVDKLSRLINSYPDLKSEIVPSSGLGLMSHACSNISKRSMGSLLSSRTKNSNNSLDISDNAK EEDAITDAVSRHLFDHAKCMIQKSKLDKSLILKSIIKGAINLHPIIIAQQEEMHPLRGIVITNILDKVKNEQAHLQIHSM ITEGDNCKIDKKFAVEDLGKLIFGKVIQLLIICDDGGISHHKNLLQDYPSVEIKTTVFGKLAMDLFTISGGNFERYEKTV YQFPATSCNRINHNAMILESTKQTLLRVIKVSYLHKLIHNNPSEIHFQGDEELDNSIKLLEARLLYLINTCNKRSDKEEN YTILLDFDDVSNIIHDIKFLTSTYTNNKEYSSSTIQAAKDCISNLAKQGIVENLKTNFENDMAILACQINSILNNDINIM QIVPIISLVKQIDEKELVLIKFSDSEKELIKNNIKFDYSMNGYMSPKFNEVSNFQQLEKSLKYYEKTPEALSPILGLLKT AHDSRKISKLANNINTDYETIKSELCTLRNDYNEEKFEDEDNDVTKSMKSTIQSLNVKKTIVSNITYLANKINQALNISS IVSVLEEYNNNYQTLDIQHDYEPLVLGDSVHTIA >Mature_594_residues MNAAAYEKSVARNYADTGEVDKLSRLINSYPDLKSEIVPSSGLGLMSHACSNISKRSMGSLLSSRTKNSNNSLDISDNAK EEDAITDAVSRHLFDHAKCMIQKSKLDKSLILKSIIKGAINLHPIIIAQQEEMHPLRGIVITNILDKVKNEQAHLQIHSM ITEGDNCKIDKKFAVEDLGKLIFGKVIQLLIICDDGGISHHKNLLQDYPSVEIKTTVFGKLAMDLFTISGGNFERYEKTV YQFPATSCNRINHNAMILESTKQTLLRVIKVSYLHKLIHNNPSEIHFQGDEELDNSIKLLEARLLYLINTCNKRSDKEEN YTILLDFDDVSNIIHDIKFLTSTYTNNKEYSSSTIQAAKDCISNLAKQGIVENLKTNFENDMAILACQINSILNNDINIM QIVPIISLVKQIDEKELVLIKFSDSEKELIKNNIKFDYSMNGYMSPKFNEVSNFQQLEKSLKYYEKTPEALSPILGLLKT AHDSRKISKLANNINTDYETIKSELCTLRNDYNEEKFEDEDNDVTKSMKSTIQSLNVKKTIVSNITYLANKINQALNISS IVSVLEEYNNNYQTLDIQHDYEPLVLGDSVHTIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67164; Mature: 67164
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAAAYEKSVARNYADTGEVDKLSRLINSYPDLKSEIVPSSGLGLMSHACSNISKRSMGS CCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH LLSSRTKNSNNSLDISDNAKEEDAITDAVSRHLFDHAKCMIQKSKLDKSLILKSIIKGAI HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC NLHPIIIAQQEEMHPLRGIVITNILDKVKNEQAHLQIHSMITEGDNCKIDKKFAVEDLGK CCCEEEEECCHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LIFGKVIQLLIICDDGGISHHKNLLQDYPSVEIKTTVFGKLAMDLFTISGGNFERYEKTV HHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHEECCCCHHHHHHHH YQFPATSCNRINHNAMILESTKQTLLRVIKVSYLHKLIHNNPSEIHFQGDEELDNSIKLL HHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH EARLLYLINTCNKRSDKEENYTILLDFDDVSNIIHDIKFLTSTYTNNKEYSSSTIQAAKD HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH CISNLAKQGIVENLKTNFENDMAILACQINSILNNDINIMQIVPIISLVKQIDEKELVLI HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEE KFSDSEKELIKNNIKFDYSMNGYMSPKFNEVSNFQQLEKSLKYYEKTPEALSPILGLLKT EECCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AHDSRKISKLANNINTDYETIKSELCTLRNDYNEEKFEDEDNDVTKSMKSTIQSLNVKKT HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCHHHH IVSNITYLANKINQALNISSIVSVLEEYNNNYQTLDIQHDYEPLVLGDSVHTIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHCC >Mature Secondary Structure MNAAAYEKSVARNYADTGEVDKLSRLINSYPDLKSEIVPSSGLGLMSHACSNISKRSMGS CCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH LLSSRTKNSNNSLDISDNAKEEDAITDAVSRHLFDHAKCMIQKSKLDKSLILKSIIKGAI HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC NLHPIIIAQQEEMHPLRGIVITNILDKVKNEQAHLQIHSMITEGDNCKIDKKFAVEDLGK CCCEEEEECCHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LIFGKVIQLLIICDDGGISHHKNLLQDYPSVEIKTTVFGKLAMDLFTISGGNFERYEKTV HHHHHHHHEEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHEECCCCHHHHHHHH YQFPATSCNRINHNAMILESTKQTLLRVIKVSYLHKLIHNNPSEIHFQGDEELDNSIKLL HHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH EARLLYLINTCNKRSDKEENYTILLDFDDVSNIIHDIKFLTSTYTNNKEYSSSTIQAAKD HHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH CISNLAKQGIVENLKTNFENDMAILACQINSILNNDINIMQIVPIISLVKQIDEKELVLI HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEE KFSDSEKELIKNNIKFDYSMNGYMSPKFNEVSNFQQLEKSLKYYEKTPEALSPILGLLKT EECCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AHDSRKISKLANNINTDYETIKSELCTLRNDYNEEKFEDEDNDVTKSMKSTIQSLNVKKT HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCHHHH IVSNITYLANKINQALNISSIVSVLEEYNNNYQTLDIQHDYEPLVLGDSVHTIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA