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The map label for this gene is ykfC [C]

Identifier: 189183364

GI number: 189183364

Start: 480120

End: 480446

Strand: Direct

Name: ykfC [C]

Synonym: OTT_0457

Alternate gene names: 189183364

Gene position: 480120-480446 (Clockwise)

Preceding gene: 189183363

Following gene: 189183368

Centisome position: 23.9

GC content: 35.17

Gene sequence:

>327_bases
ATGAAAAAGTTAGCAGATAACAATCTATCATCTGTAAAACCGATTAAGCATGTGCACATACCAAAAAGTAAAGTCAAATC
TAGACCTTTAGGGTTGCCAACTATTTTGAATAGGTGTAAACATGCTGTTGTAAAACCAGCACTTGAACCATATTTGGCAG
CTAAGTTTGAAAGTTGCAGTTGCATTAGACTTGAACGTAGCCCTCAAGATGCAATACAGAGAATGTCTAGTATTGTTCGC
CCTGGAACTACTAGGAATTGGATACTAGACGCTGATGAAGGAGCATTTGATAATATTGATCATAATTTTCTTTTGAAAAT
TATATGA

Upstream 100 bases:

>100_bases
GAAAGAAGATGGAGGCAAAAGACCTTTAGTAATATCATGTTTTGAAAATAAGATAGTTGATAAAATAGTTGTTAACACAG
ATAAAGAAAGGAGTTTGCTG

Downstream 100 bases:

>100_bases
AATTTTTCTGCTCGTAATTGGATTCTAGCATGGCTTCAATCTCATGTAATACATCAAATTATCAAAACAACAACTGCTAC
TCCACAAGGTATATTAATAT

Product: reverse transcriptase

Products: NA

Alternate protein names: Reverse Transcriptase; Reverse Transcriptase/Endonuclease Protein; Group II Intron Maturase-Specific Domain Family; Group II Intron Encoded Reverse Transcriptase; Group II Intron-Associated Open Reading Frame; Group II Intron-Encoding Maturase

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MKKLADNNLSSVKPIKHVHIPKSKVKSRPLGLPTILNRCKHAVVKPALEPYLAAKFESCSCIRLERSPQDAIQRMSSIVR
PGTTRNWILDADEGAFDNIDHNFLLKII

Sequences:

>Translated_108_residues
MKKLADNNLSSVKPIKHVHIPKSKVKSRPLGLPTILNRCKHAVVKPALEPYLAAKFESCSCIRLERSPQDAIQRMSSIVR
PGTTRNWILDADEGAFDNIDHNFLLKII
>Mature_108_residues
MKKLADNNLSSVKPIKHVHIPKSKVKSRPLGLPTILNRCKHAVVKPALEPYLAAKFESCSCIRLERSPQDAIQRMSSIVR
PGTTRNWILDADEGAFDNIDHNFLLKII

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12155; Mature: 12155

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLADNNLSSVKPIKHVHIPKSKVKSRPLGLPTILNRCKHAVVKPALEPYLAAKFESCS
CCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CIRLERSPQDAIQRMSSIVRPGTTRNWILDADEGAFDNIDHNFLLKII
EEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MKKLADNNLSSVKPIKHVHIPKSKVKSRPLGLPTILNRCKHAVVKPALEPYLAAKFESCS
CCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CIRLERSPQDAIQRMSSIVRPGTTRNWILDADEGAFDNIDHNFLLKII
EEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA