| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189183347
Identifier: 189183347
GI number: 189183347
Start: 459503
End: 461008
Strand: Direct
Name: 189183347
Synonym: OTT_0440
Alternate gene names: NA
Gene position: 459503-461008 (Clockwise)
Preceding gene: 189183341
Following gene: 189183348
Centisome position: 22.87
GC content: 30.68
Gene sequence:
>1506_bases ATGACAAATTTTATCCTCAAATATATAGAAAATGCTAATACAAATATAGAAGCTAAAATTGAACAACAGGAATATGTCCA GCAAAAGTTGTTCATTATGACTCAAACCATAAAAACATCAGACTTTAATATAAAATATGCAATTGCGTACTTAACGCCGT ATGATCAGCAACTTGTAAAACAAAAATTAATAACCAAATTAACTCCATATTTTAAGGAATATTTTACAAAGTATGGTTGC GTTGAAGAAGTAAGCGAAAGAATAGCTGAATGGCTTATGAATCAAGAATCGCAGTCTGATAAACCAAAGCTTATAGCATC AAATTTTGCCAACTTTTTTAACGATAAAAAATTACAAAAGACTATTAAAAATAATATAACAAAGCTAACAACAGATACTC AGAATCAGTGTAAAGGAATTCTTTACTTAAAAGTTTTGTCACATATAACACCATCTTCACTACAAAATATAACTTCAGGC GCAATCGATATTTTAAAAACAGAATTAACACAGCGATTTGAAGAAGAATACTTGGCAGAATGTTTTATAGAATGTATAAA ACCATTTATACACAAATTTGCATGTTTTTTTATTATGCGCACTGCAGAAGATGGACATATTGATATGGCAGATAAGTTCT CGGATGTTAATGGTTGTATAGAAGATATTTACAAGTTCAAGTTTGATAAGTCAGGCAAAGCTGCAGTTACAAAAATGAAA TCTGCAATAAATCATTTTATAGAACTAAATCATCTAAATAAGAATTTTTTTACAAGCTTAAGTAGTAAAATGGTTACATT TATAGAAAAACATAAAGCACAACAGCCTAATTTCATTGCCATGAAAACAGACATTGAGATTGAAAATGGAAAAAGCAACA GTGACATTCAGTCAATACAATCTGATTTATATTGTGACCTAACTGATATAGAAGATCAAATAGAAGTTGACCTACGAGAT GCTGGATTGCTATCTGAAGACAATCTACCTCAATCTGAAAAATTGCCTGAAAACATTACAGAGCAAATTAGATTGATACT TGAAAATCAACAACATGACTTAACTAATAGTGATATTGACAGCGACGATGAGATTATGTTAACAGAAGCTCAAGATTTAG AACTAGAAAAATTAGTATTGAAAGATGTTCCTCAACCTGAAAAAATGCCTGAAAACATTGCGGAGCAAATTAGATCGACA CTTGAAAATCAACAACATAACTTAACTAATAGTGATATTGACAGCGACGATGAGATTATGTTAACAGAAGCTGAAGACTT AGTACTAGCAGAATGGGTATTGGAAGATATTCATCAATCTGAAAAAATGCCTGAAAACATTACAGAGCAGATTAGATTGA CACTTGAAAACCAACAACATGACTTAACTAATAGTGATATTGACAGCGACGATGAGATTATGTTAACAGAAGCTGAAGAC TTAGAACTAGAAAAATTGGTATTTGAAAAGCTTCCTAACCATGAGGAAATACCTGACTGGATATAA
Upstream 100 bases:
>100_bases ATAAATTAGAGCTTAATCTTAACATTTCTTAACTTTTTAGTTGTGTTTTTTAATTATTCATAATATATATATAAAACTTT AAACTATAAGGTAACAATAT
Downstream 100 bases:
>100_bases ACTGCTTTTTATTAACTAAAGATGAAACTAAAATGCTATGCCGCAGGTAGATTAGTCTTAAGAGTAAGCACTTATTGCGC TATGTTATCAGCACAGCATC
Product: repeat-containing protein B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 501; Mature: 500
Protein sequence:
>501_residues MTNFILKYIENANTNIEAKIEQQEYVQQKLFIMTQTIKTSDFNIKYAIAYLTPYDQQLVKQKLITKLTPYFKEYFTKYGC VEEVSERIAEWLMNQESQSDKPKLIASNFANFFNDKKLQKTIKNNITKLTTDTQNQCKGILYLKVLSHITPSSLQNITSG AIDILKTELTQRFEEEYLAECFIECIKPFIHKFACFFIMRTAEDGHIDMADKFSDVNGCIEDIYKFKFDKSGKAAVTKMK SAINHFIELNHLNKNFFTSLSSKMVTFIEKHKAQQPNFIAMKTDIEIENGKSNSDIQSIQSDLYCDLTDIEDQIEVDLRD AGLLSEDNLPQSEKLPENITEQIRLILENQQHDLTNSDIDSDDEIMLTEAQDLELEKLVLKDVPQPEKMPENIAEQIRST LENQQHNLTNSDIDSDDEIMLTEAEDLVLAEWVLEDIHQSEKMPENITEQIRLTLENQQHDLTNSDIDSDDEIMLTEAED LELEKLVFEKLPNHEEIPDWI
Sequences:
>Translated_501_residues MTNFILKYIENANTNIEAKIEQQEYVQQKLFIMTQTIKTSDFNIKYAIAYLTPYDQQLVKQKLITKLTPYFKEYFTKYGC VEEVSERIAEWLMNQESQSDKPKLIASNFANFFNDKKLQKTIKNNITKLTTDTQNQCKGILYLKVLSHITPSSLQNITSG AIDILKTELTQRFEEEYLAECFIECIKPFIHKFACFFIMRTAEDGHIDMADKFSDVNGCIEDIYKFKFDKSGKAAVTKMK SAINHFIELNHLNKNFFTSLSSKMVTFIEKHKAQQPNFIAMKTDIEIENGKSNSDIQSIQSDLYCDLTDIEDQIEVDLRD AGLLSEDNLPQSEKLPENITEQIRLILENQQHDLTNSDIDSDDEIMLTEAQDLELEKLVLKDVPQPEKMPENIAEQIRST LENQQHNLTNSDIDSDDEIMLTEAEDLVLAEWVLEDIHQSEKMPENITEQIRLTLENQQHDLTNSDIDSDDEIMLTEAED LELEKLVFEKLPNHEEIPDWI >Mature_500_residues TNFILKYIENANTNIEAKIEQQEYVQQKLFIMTQTIKTSDFNIKYAIAYLTPYDQQLVKQKLITKLTPYFKEYFTKYGCV EEVSERIAEWLMNQESQSDKPKLIASNFANFFNDKKLQKTIKNNITKLTTDTQNQCKGILYLKVLSHITPSSLQNITSGA IDILKTELTQRFEEEYLAECFIECIKPFIHKFACFFIMRTAEDGHIDMADKFSDVNGCIEDIYKFKFDKSGKAAVTKMKS AINHFIELNHLNKNFFTSLSSKMVTFIEKHKAQQPNFIAMKTDIEIENGKSNSDIQSIQSDLYCDLTDIEDQIEVDLRDA GLLSEDNLPQSEKLPENITEQIRLILENQQHDLTNSDIDSDDEIMLTEAQDLELEKLVLKDVPQPEKMPENIAEQIRSTL ENQQHNLTNSDIDSDDEIMLTEAEDLVLAEWVLEDIHQSEKMPENITEQIRLTLENQQHDLTNSDIDSDDEIMLTEAEDL ELEKLVFEKLPNHEEIPDWI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58135; Mature: 58004
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFILKYIENANTNIEAKIEQQEYVQQKLFIMTQTIKTSDFNIKYAIAYLTPYDQQLVK CCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHH QKLITKLTPYFKEYFTKYGCVEEVSERIAEWLMNQESQSDKPKLIASNFANFFNDKKLQK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TIKNNITKLTTDTQNQCKGILYLKVLSHITPSSLQNITSGAIDILKTELTQRFEEEYLAE HHHCCCCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFIECIKPFIHKFACFFIMRTAEDGHIDMADKFSDVNGCIEDIYKFKFDKSGKAAVTKMK HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SAINHFIELNHLNKNFFTSLSSKMVTFIEKHKAQQPNFIAMKTDIEIENGKSNSDIQSIQ HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHH SDLYCDLTDIEDQIEVDLRDAGLLSEDNLPQSEKLPENITEQIRLILENQQHDLTNSDID HHHCCCCCCCCCHHEEEHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCC SDDEIMLTEAQDLELEKLVLKDVPQPEKMPENIAEQIRSTLENQQHNLTNSDIDSDDEIM CCCCEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE LTEAEDLVLAEWVLEDIHQSEKMPENITEQIRLTLENQQHDLTNSDIDSDDEIMLTEAED EECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC LELEKLVFEKLPNHEEIPDWI CHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TNFILKYIENANTNIEAKIEQQEYVQQKLFIMTQTIKTSDFNIKYAIAYLTPYDQQLVK CHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHH QKLITKLTPYFKEYFTKYGCVEEVSERIAEWLMNQESQSDKPKLIASNFANFFNDKKLQK HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH TIKNNITKLTTDTQNQCKGILYLKVLSHITPSSLQNITSGAIDILKTELTQRFEEEYLAE HHHCCCCEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CFIECIKPFIHKFACFFIMRTAEDGHIDMADKFSDVNGCIEDIYKFKFDKSGKAAVTKMK HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH SAINHFIELNHLNKNFFTSLSSKMVTFIEKHKAQQPNFIAMKTDIEIENGKSNSDIQSIQ HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHH SDLYCDLTDIEDQIEVDLRDAGLLSEDNLPQSEKLPENITEQIRLILENQQHDLTNSDID HHHCCCCCCCCCHHEEEHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCC SDDEIMLTEAQDLELEKLVLKDVPQPEKMPENIAEQIRSTLENQQHNLTNSDIDSDDEIM CCCCEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE LTEAEDLVLAEWVLEDIHQSEKMPENITEQIRLTLENQQHDLTNSDIDSDDEIMLTEAED EECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC LELEKLVFEKLPNHEEIPDWI CHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA