Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
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Accession | NC_010741 |
Length | 1,139,457 |
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The map label for this gene is 189026006
Identifier: 189026006
GI number: 189026006
Start: 849849
End: 850310
Strand: Reverse
Name: 189026006
Synonym: TPASS_0781
Alternate gene names: NA
Gene position: 850310-849849 (Counterclockwise)
Preceding gene: 189026007
Following gene: 189026005
Centisome position: 74.62
GC content: 54.33
Gene sequence:
>462_bases GTGTCGGACACCATAAAGCCCACCATTCAGGATGTGGTATTGGCGGGAAAGACAGGGGTGTTGGCTCTTTCGGGGACAGC AGCGCCGCGCGATGCCGACGGGTATGTCTATACACGCAAGCGCACCCGTGTGCACAGGCGCGTTACGCAGGGAACCTATC GTCTGTATGCGGCAGTCGCAGATGTGTTAGAGCATGGTACCCAGACGTTCACTCCGTTCCAAGTGCATGTTGTGGTGAAC GGATCGGAAGTGAGCGCGGTGTCCTTCGAGTTGATTGTGGCGAAAGATTCGCAGGCGTGTCTGTCAGGGTCGCTTTTAAA TGAACGCCTGTTATATGAGATGAAGGGTCGCGTGTTTTTGGGGAGCGTAGTGCTCACGCGTGGTACTGCAGAGCTTGCGA TTAGCGCGCGTGATATTTCAGGCAATGAACGAACGGAAGTGTTCTTTTTACAGGTGGAGTAA
Upstream 100 bases:
>100_bases CGCAGGATCAAGTGCGTGGGCACCTCCAAACAGTTTTGTGTTTCCAGGTGATTGATACAAAAAACAAAGTGTATCTCAAT CCCTTGCTCCTGCTGCTTCG
Downstream 100 bases:
>100_bases GGCGTTCGTAGTTTTTTCATTTGTACACCGGGGTGTGTGAGGGGGTGTGGTGTGGATAGGACGGGTGGATACGTGCGGCT TGCGCTTGCAGCCCCTGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSDTIKPTIQDVVLAGKTGVLALSGTAAPRDADGYVYTRKRTRVHRRVTQGTYRLYAAVADVLEHGTQTFTPFQVHVVVN GSEVSAVSFELIVAKDSQACLSGSLLNERLLYEMKGRVFLGSVVLTRGTAELAISARDISGNERTEVFFLQVE
Sequences:
>Translated_153_residues MSDTIKPTIQDVVLAGKTGVLALSGTAAPRDADGYVYTRKRTRVHRRVTQGTYRLYAAVADVLEHGTQTFTPFQVHVVVN GSEVSAVSFELIVAKDSQACLSGSLLNERLLYEMKGRVFLGSVVLTRGTAELAISARDISGNERTEVFFLQVE >Mature_152_residues SDTIKPTIQDVVLAGKTGVLALSGTAAPRDADGYVYTRKRTRVHRRVTQGTYRLYAAVADVLEHGTQTFTPFQVHVVVNG SEVSAVSFELIVAKDSQACLSGSLLNERLLYEMKGRVFLGSVVLTRGTAELAISARDISGNERTEVFFLQVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y781_TREPA (O83760)
Other databases:
- EMBL: AE000520 - PIR: F71282 - RefSeq: NP_219218.1 - ProteinModelPortal: O83760 - GeneID: 2611173 - GenomeReviews: AE000520_GR - KEGG: tpa:TP0781 - NMPDR: fig|243276.1.peg.777 - TIGR: TP_0781 - HOGENOM: HBG732103 - ProtClustDB: CLSK2300296 - BioCyc: TPAL243276:TP_0781-MONOMER
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16678; Mature: 16547
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTIKPTIQDVVLAGKTGVLALSGTAAPRDADGYVYTRKRTRVHRRVTQGTYRLYAAVA CCCCCCCCHHHEEEECCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH DVLEHGTQTFTPFQVHVVVNGSEVSAVSFELIVAKDSQACLSGSLLNERLLYEMKGRVFL HHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEE GSVVLTRGTAELAISARDISGNERTEVFFLQVE EEEEEECCCCCEEEEEEECCCCCCEEEEEEEEC >Mature Secondary Structure SDTIKPTIQDVVLAGKTGVLALSGTAAPRDADGYVYTRKRTRVHRRVTQGTYRLYAAVA CCCCCCCHHHEEEECCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH DVLEHGTQTFTPFQVHVVVNGSEVSAVSFELIVAKDSQACLSGSLLNERLLYEMKGRVFL HHHHCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEE GSVVLTRGTAELAISARDISGNERTEVFFLQVE EEEEEECCCCCEEEEEEECCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9665876