Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
---|---|
Accession | NC_010741 |
Length | 1,139,457 |
Click here to switch to the map view.
The map label for this gene is cdsA [H]
Identifier: 189025828
GI number: 189025828
Start: 655501
End: 656364
Strand: Reverse
Name: cdsA [H]
Synonym: TPASS_0602
Alternate gene names: 189025828
Gene position: 656364-655501 (Counterclockwise)
Preceding gene: 189025829
Following gene: 189025827
Centisome position: 57.6
GC content: 48.5
Gene sequence:
>864_bases ATGAGCGCGGAAATAAAGAGGCTGTTAATCTTTTTTTTCGGCGTTCCAACTATTCTTATGTTGGTATATGCGGCACCGCA TGCACACTTCCTAGCGTTCCATTTGGTTATCTTCGGATCAGTTATGGGTGCGGTATGGGAAATGCATGCGATGGTGTCGC GCAGGATGTGCACGTACCCACTGGTTTTGTTGATCCCTTTCAGTCTTGTGCTTCCGCTTTTAGGATATGCAGCGCTGTGG CAGCCTGCACGGGGCGCTGAATCTGTCCTTTTTATTGGAGCACTGGGCACGCTGCTCATGAGTGTTTTTTTCACCGAATT GGTGTATTCGTTTTCTGCTTCTTTTGAAAACGCCCTTGAGCGTATGGCCTCGGCACTGTTGCTTGTTTTGTATCCAGGTA TCTTTAGCCTTTTTTTTTCGCTCATTACGCGGTGGCGTCATGCAGAGATCGCATTGGTAATTTTTTTTCTCATGGTTTTT ACGTGCGACTCTTGTGCATGGTTCTGTGGGACGCTCTGGGGAGTCAACAACAGAGGGATAATTCCTGCAAGTCCTAAAAA GAGTATTGCAGGTTTTATTGGAGGTTTTGCCGGTTCGGTAGGTGCAGGGTGTTTTGGCTCACTTGTATTTGGTTCGCGTG TGACGCTCTCTTTGGGGATGCTCATGGGTGTTGGAGCCTTGGTAGGACTGACTGCCATTGTAGGCGATCTAGTCGAGTCG GTGATGAAACGTTCGGCTCAGGTAAAGGATTCAGGATTTTTTACCCCCGGGCGGGGCGGAATTATGGATAACCTGGATTC GCTTGCGCCGTCACTGGGGACTTTTTACATTGCATGTGAGTGTTTTGGGATCGCTGCAGTATGA
Upstream 100 bases:
>100_bases TCTATTTTACCGATATCCTGTGGCCTGACTTTCGGGTAGAAGACATGCTGCGCGCCCTGGATGAGTATCGCCTGCGCACG CGTACCTTTGGGGGTTTGGA
Downstream 100 bases:
>100_bases GTGTGCGACGTGTGGTAGTGCTGGGCATTACTGGTTCTATTGGAGCTGCAGCACTCAAACTTCTGCGTCGGTTTCCCGAT CGGTTCTTGCTGGTGGGCGC
Product: phosphatidate cytidylyltransferase
Products: NA
Alternate protein names: CDP-DAG synthase; CDP-DG synthase; CDP-diacylglycerol synthase; CDS; CDP-diglyceride pyrophosphorylase; CDP-diglyceride synthase; CTP:phosphatidate cytidylyltransferase [H]
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MSAEIKRLLIFFFGVPTILMLVYAAPHAHFLAFHLVIFGSVMGAVWEMHAMVSRRMCTYPLVLLIPFSLVLPLLGYAALW QPARGAESVLFIGALGTLLMSVFFTELVYSFSASFENALERMASALLLVLYPGIFSLFFSLITRWRHAEIALVIFFLMVF TCDSCAWFCGTLWGVNNRGIIPASPKKSIAGFIGGFAGSVGAGCFGSLVFGSRVTLSLGMLMGVGALVGLTAIVGDLVES VMKRSAQVKDSGFFTPGRGGIMDNLDSLAPSLGTFYIACECFGIAAV
Sequences:
>Translated_287_residues MSAEIKRLLIFFFGVPTILMLVYAAPHAHFLAFHLVIFGSVMGAVWEMHAMVSRRMCTYPLVLLIPFSLVLPLLGYAALW QPARGAESVLFIGALGTLLMSVFFTELVYSFSASFENALERMASALLLVLYPGIFSLFFSLITRWRHAEIALVIFFLMVF TCDSCAWFCGTLWGVNNRGIIPASPKKSIAGFIGGFAGSVGAGCFGSLVFGSRVTLSLGMLMGVGALVGLTAIVGDLVES VMKRSAQVKDSGFFTPGRGGIMDNLDSLAPSLGTFYIACECFGIAAV >Mature_286_residues SAEIKRLLIFFFGVPTILMLVYAAPHAHFLAFHLVIFGSVMGAVWEMHAMVSRRMCTYPLVLLIPFSLVLPLLGYAALWQ PARGAESVLFIGALGTLLMSVFFTELVYSFSASFENALERMASALLLVLYPGIFSLFFSLITRWRHAEIALVIFFLMVFT CDSCAWFCGTLWGVNNRGIIPASPKKSIAGFIGGFAGSVGAGCFGSLVFGSRVTLSLGMLMGVGALVGLTAIVGDLVESV MKRSAQVKDSGFFTPGRGGIMDNLDSLAPSLGTFYIACECFGIAAV
Specific function: Phospholipid biosynthesis. [C]
COG id: COG0575
COG function: function code I; CDP-diglyceride synthetase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI87081696, Length=134, Percent_Identity=37.3134328358209, Blast_Score=69, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: =2.7.7.41 [H]
Molecular weight: Translated: 30867; Mature: 30736
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAEIKRLLIFFFGVPTILMLVYAAPHAHFLAFHLVIFGSVMGAVWEMHAMVSRRMCTYP CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLLIPFSLVLPLLGYAALWQPARGAESVLFIGALGTLLMSVFFTELVYSFSASFENALE HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMASALLLVLYPGIFSLFFSLITRWRHAEIALVIFFLMVFTCDSCAWFCGTLWGVNNRGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IPASPKKSIAGFIGGFAGSVGAGCFGSLVFGSRVTLSLGMLMGVGALVGLTAIVGDLVES CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMKRSAQVKDSGFFTPGRGGIMDNLDSLAPSLGTFYIACECFGIAAV HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SAEIKRLLIFFFGVPTILMLVYAAPHAHFLAFHLVIFGSVMGAVWEMHAMVSRRMCTYP CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LVLLIPFSLVLPLLGYAALWQPARGAESVLFIGALGTLLMSVFFTELVYSFSASFENALE HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RMASALLLVLYPGIFSLFFSLITRWRHAEIALVIFFLMVFTCDSCAWFCGTLWGVNNRGI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IPASPKKSIAGFIGGFAGSVGAGCFGSLVFGSRVTLSLGMLMGVGALVGLTAIVGDLVES CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VMKRSAQVKDSGFFTPGRGGIMDNLDSLAPSLGTFYIACECFGIAAV HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]