Click here to switch to the map view.

The map label for this gene is ynfJ [C]

Identifier: 188586566

GI number: 188586566

Start: 2061486

End: 2062775

Strand: Reverse

Name: ynfJ [C]

Synonym: Nther_1953

Alternate gene names: 188586566

Gene position: 2062775-2061486 (Counterclockwise)

Preceding gene: 188586567

Following gene: 188586565

Centisome position: 65.16

GC content: 35.66

Gene sequence:

>1290_bases
ATGAATCCATTGCAAACTTCAACAGGTTATATTGTAAAATGGTTTATTGTAGCTGTCTTAGTAGGAATTTTAGGAGGTTT
GTCAGCTTTACTATTAAATACAGCAATAGACTTATTCTATTTTATTAGAGAAAGATATATACATTACCTGTTAGGCCCTG
TTATTGCAGGAATTTTCTTAGGATTTGTCTTCCATAAGATTGATATATCTACCAAGAGTTTTGGAACGAATGTTTTCATT
AATAGTGTCAACCGTTTAAATGGTGCAATTAAAGGGAGGACTTCTCTATTTAAGTTATTTTCTTCTAGCTTGAATTTAGG
TTTTGGGGCCAGCGGAGGGATAGAAGGACCAATGGTGCTTATTGGAGGGAGCATGAGCAATTTTTTATTGAGGCGTATCA
AACCTATTGCCAAATATTTTAGTAATGAAGATATGAGGATTGGCACTATATGCGGCGCAGCTGGTGCTGTGGGAGCAGTA
TTTCGATCGCCTCTTGGAGGTGGTATTTTTGTTGTTGAACTCCTTTATAAATCAGCTTTACATTATAATGAATTATTCCC
AGCAATTTTATCTAGTGCTATAGGTTATGTGACTTATTCATTAGTTCTAGACACTGATCCATTATTTACCATCCCTTCAT
ATAATATGGAGGTGCAATATATTCCTTTTATAGTTGTTACAGCAGTACTGACAGGGATAATCAGTATCTTTTTTAAGATA
GTTTTTTACGGGAGCAGGGAATTTTTTGAAAACTCTAGTATACCTCAACCTTTACGCCCTGCTGTTGGAGGGATTTTTAC
AGGGATGACAGCTCTCATTGCTGGTCAAGAAGTTTTAGGTATAGGCACCGAATATGTGCAAAAATTCATTTTGACCAGTA
TGTCCATTGATATCATTTTGTTATTATTATTAGGTAAAATTTTTGCTACAGCTTTTACAATTGGAAGCGGAGGTAGTGCA
GGAAAAGTGATTCCAGCTTTATATATAGGTGCTTTGGCAGGCAGTTTGGTTTCCAGCTTGTTGAGCTTTGAGTTTGCCGA
TTCTGCTTTGCATTACAGTCTGGTTGTAGTGGGTATGACTGCTTCTTTGTCTGCAATAGCAGGTGTCCCAATTGCTTCTG
TTGTAATGATTATTGAAATGTTAGGTTTAAAAATGGGTGTATCTGCAGTTATAGGAGCTGTTATTGGATATATTATAGGT
AATAATCAACAATTTTATGAAGTTACTAATGATCAATCCTTTAGACAGGTTTGTGAGCACTTTAAATTTCTAGACCGAGA
GGTTAGTTAA

Upstream 100 bases:

>100_bases
GCTCTGTTATAGTTGCATGCTGGTAAACTCAAAATATCAATTTCAAATTGTTAGATTGACACATCGAATAAGTATTCCAG
TTGATATGGTGGTGATATAG

Downstream 100 bases:

>100_bases
TTTTATTTTTTTCGGTATTTGAATTATAATGGGTTGTAAATATTATGATTTCAAATTAGCAAGTCATTTTTAAAATTTTA
GGCGCTGTTATACTTAGTTG

Product: Chloride channel core

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MNPLQTSTGYIVKWFIVAVLVGILGGLSALLLNTAIDLFYFIRERYIHYLLGPVIAGIFLGFVFHKIDISTKSFGTNVFI
NSVNRLNGAIKGRTSLFKLFSSSLNLGFGASGGIEGPMVLIGGSMSNFLLRRIKPIAKYFSNEDMRIGTICGAAGAVGAV
FRSPLGGGIFVVELLYKSALHYNELFPAILSSAIGYVTYSLVLDTDPLFTIPSYNMEVQYIPFIVVTAVLTGIISIFFKI
VFYGSREFFENSSIPQPLRPAVGGIFTGMTALIAGQEVLGIGTEYVQKFILTSMSIDIILLLLLGKIFATAFTIGSGGSA
GKVIPALYIGALAGSLVSSLLSFEFADSALHYSLVVVGMTASLSAIAGVPIASVVMIIEMLGLKMGVSAVIGAVIGYIIG
NNQQFYEVTNDQSFRQVCEHFKFLDREVS

Sequences:

>Translated_429_residues
MNPLQTSTGYIVKWFIVAVLVGILGGLSALLLNTAIDLFYFIRERYIHYLLGPVIAGIFLGFVFHKIDISTKSFGTNVFI
NSVNRLNGAIKGRTSLFKLFSSSLNLGFGASGGIEGPMVLIGGSMSNFLLRRIKPIAKYFSNEDMRIGTICGAAGAVGAV
FRSPLGGGIFVVELLYKSALHYNELFPAILSSAIGYVTYSLVLDTDPLFTIPSYNMEVQYIPFIVVTAVLTGIISIFFKI
VFYGSREFFENSSIPQPLRPAVGGIFTGMTALIAGQEVLGIGTEYVQKFILTSMSIDIILLLLLGKIFATAFTIGSGGSA
GKVIPALYIGALAGSLVSSLLSFEFADSALHYSLVVVGMTASLSAIAGVPIASVVMIIEMLGLKMGVSAVIGAVIGYIIG
NNQQFYEVTNDQSFRQVCEHFKFLDREVS
>Mature_429_residues
MNPLQTSTGYIVKWFIVAVLVGILGGLSALLLNTAIDLFYFIRERYIHYLLGPVIAGIFLGFVFHKIDISTKSFGTNVFI
NSVNRLNGAIKGRTSLFKLFSSSLNLGFGASGGIEGPMVLIGGSMSNFLLRRIKPIAKYFSNEDMRIGTICGAAGAVGAV
FRSPLGGGIFVVELLYKSALHYNELFPAILSSAIGYVTYSLVLDTDPLFTIPSYNMEVQYIPFIVVTAVLTGIISIFFKI
VFYGSREFFENSSIPQPLRPAVGGIFTGMTALIAGQEVLGIGTEYVQKFILTSMSIDIILLLLLGKIFATAFTIGSGGSA
GKVIPALYIGALAGSLVSSLLSFEFADSALHYSLVVVGMTASLSAIAGVPIASVVMIIEMLGLKMGVSAVIGAVIGYIIG
NNQQFYEVTNDQSFRQVCEHFKFLDREVS

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family [H]

Homologues:

Organism=Escherichia coli, GI87081943, Length=337, Percent_Identity=27.299703264095, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 46055; Mature: 46055

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPLQTSTGYIVKWFIVAVLVGILGGLSALLLNTAIDLFYFIRERYIHYLLGPVIAGIFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVFHKIDISTKSFGTNVFINSVNRLNGAIKGRTSLFKLFSSSLNLGFGASGGIEGPMVL
HHHHHHHCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IGGSMSNFLLRRIKPIAKYFSNEDMRIGTICGAAGAVGAVFRSPLGGGIFVVELLYKSAL
ECCCHHHHHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
HYNELFPAILSSAIGYVTYSLVLDTDPLFTIPSYNMEVQYIPFIVVTAVLTGIISIFFKI
HHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
VFYGSREFFENSSIPQPLRPAVGGIFTGMTALIAGQEVLGIGTEYVQKFILTSMSIDIIL
HHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHH
LLLLGKIFATAFTIGSGGSAGKVIPALYIGALAGSLVSSLLSFEFADSALHYSLVVVGMT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLSAIAGVPIASVVMIIEMLGLKMGVSAVIGAVIGYIIGNNQQFYEVTNDQSFRQVCEH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
FKFLDREVS
HHHHHHCCC
>Mature Secondary Structure
MNPLQTSTGYIVKWFIVAVLVGILGGLSALLLNTAIDLFYFIRERYIHYLLGPVIAGIFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFVFHKIDISTKSFGTNVFINSVNRLNGAIKGRTSLFKLFSSSLNLGFGASGGIEGPMVL
HHHHHHHCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IGGSMSNFLLRRIKPIAKYFSNEDMRIGTICGAAGAVGAVFRSPLGGGIFVVELLYKSAL
ECCCHHHHHHHHHHHHHHHHCCCCCEEEEHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
HYNELFPAILSSAIGYVTYSLVLDTDPLFTIPSYNMEVQYIPFIVVTAVLTGIISIFFKI
HHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHH
VFYGSREFFENSSIPQPLRPAVGGIFTGMTALIAGQEVLGIGTEYVQKFILTSMSIDIIL
HHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHH
LLLLGKIFATAFTIGSGGSAGKVIPALYIGALAGSLVSSLLSFEFADSALHYSLVVVGMT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASLSAIAGVPIASVVMIIEMLGLKMGVSAVIGAVIGYIIGNNQQFYEVTNDQSFRQVCEH
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH
FKFLDREVS
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]